Information for 9-CAGAGTTGCCTAAGAG (Motif 9)

G A T C C G T A C T A G C T G A A C T G G A C T C A G T A C T G G T A C G A T C C G A T T C G A C G T A A T C G G C T A C T A G
Reverse Opposite:
A G T C C G A T A T G C A C G T A G C T C G T A C A T G A C T G G T A C G C T A C T G A A G T C A G C T A G T C C G A T C A T G
p-value:1e-11
log p-value:-2.662e+01
Information Content per bp:1.691
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.20%
Number of Background Sequences with motif14.8
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets65.7 +/- 20.2bp
Average Position of motif in Background41.4 +/- 22.4bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CAGAGTTGCCTAAGAG
-NNACTTGCCTT----
 G A T C C G T A C T A G C T G A A C T G G A C T C A G T A C T G G T A C G A T C C G A T T C G A C G T A A T C G G C T A C T A G
A C G T T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T A C G T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:2
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CAGAGTTGCCTAAGAG
ACAAAGGNBCCT-----
 A C G T G A T C C G T A C T A G C T G A A C T G G A C T C A G T A C T G G T A C G A T C C G A T T C G A C G T A A T C G G C T A C T A G
G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T A C G T A C G T A C G T A C G T A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:3
Score:0.50
Offset:4
Orientation:reverse strand
Alignment:CAGAGTTGCCTAAGAG--
----GTTGCCATGGNAAC
 G A T C C G T A C T A G C T G A A C T G G A C T C A G T A C T G G T A C G A T C C G A T T C G A C G T A A T C G G C T A C T A G A C G T A C G T
A C G T A C G T A C G T A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:4
Score:0.49
Offset:3
Orientation:reverse strand
Alignment:CAGAGTTGCCTAAGAG--
---ATTTGCATAACAAAG
 G A T C C G T A C T A G C T G A A C T G G A C T C A G T A C T G G T A C G A T C C G A T T C G A C G T A A T C G G C T A C T A G A C G T A C G T
A C G T A C G T A C G T G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G

STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer

Match Rank:5
Score:0.49
Offset:6
Orientation:forward strand
Alignment:CAGAGTTGCCTAAGAG
------TTCCKNAGAA
 G A T C C G T A C T A G C T G A A C T G G A C T C A G T A C T G G T A C G A T C C G A T T C G A C G T A A T C G G C T A C T A G
A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T G A T C G A T C A C G T G A T C C T G A T A C G C G T A G T C A

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.49
Offset:3
Orientation:forward strand
Alignment:CAGAGTTGCCTAAGAG--
---ATTTGCATAACAATG
 G A T C C G T A C T A G C T G A A C T G G A C T C A G T A C T G G T A C G A T C C G A T T C G A C G T A A T C G G C T A C T A G A C G T A C G T
A C G T A C G T A C G T G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:7
Score:0.49
Offset:3
Orientation:forward strand
Alignment:CAGAGTTGCCTAAGAG--
---TGTTKCCTAGCAACM
 G A T C C G T A C T A G C T G A A C T G G A C T C A G T A C T G G T A C G A T C C G A T T C G A C G T A A T C G G C T A C T A G A C G T A C G T
A C G T A C G T A C G T C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C

Pou2f3/MA0627.1/Jaspar

Match Rank:8
Score:0.48
Offset:-1
Orientation:reverse strand
Alignment:-CAGAGTTGCCTAAGAG
TNTAATTTGCATACNA-
 A C G T G A T C C G T A C T A G C T G A A C T G G A C T C A G T A C T G G T A C G A T C C G A T T C G A C G T A A T C G G C T A C T A G
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A A C G T

PH0145.1_Pou2f3/Jaspar

Match Rank:9
Score:0.48
Offset:-1
Orientation:reverse strand
Alignment:-CAGAGTTGCCTAAGAG
TNTAATTTGCATACNA-
 A C G T G A T C C G T A C T A G C T G A A C T G G A C T C A G T A C T G G T A C G A T C C G A T T C G A C G T A A T C G G C T A C T A G
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.48
Offset:3
Orientation:forward strand
Alignment:CAGAGTTGCCTAAGAG
---ATTTGCATAA---
 G A T C C G T A C T A G C T G A A C T G G A C T C A G T A C T G G T A C G A T C C G A T T C G A C G T A A T C G G C T A C T A G
A C G T A C G T A C G T C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A A C G T A C G T A C G T