Information for 4-AAACTMACAAAGGGKG (Motif 4)

G C T A C G T A G T C A A T G C G C A T G T C A C G T A G T A C C G T A G C T A C G T A C T A G A T C G A C T G A C G T A C T G
Reverse Opposite:
G T A C G T C A G T A C A T G C A G T C A C G T C G A T A C G T A C T G C G A T A C G T C G T A A T C G A C G T A C G T C A G T
p-value:1e-13
log p-value:-3.150e+01
Information Content per bp:1.736
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.7 +/- 24.0bp
Average Position of motif in Background29.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0119.1_Foxa2_2/Jaspar

Match Rank:1
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-AAACTMACAAAGGGKG
AAAAATAACAAACGG--
 A C G T G C T A C G T A G T C A A T G C G C A T G T C A C G T A G T A C C G T A G C T A C G T A C T A G A T C G A C T G A C G T A C T G
T C G A T C G A C G T A C G T A G T C A A C G T C T G A C G T A G A T C G T C A G C T A C T G A T A G C T A C G A T C G A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:2
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:AAACTMACAAAGGGKG
-----AACAAAGG---
 G C T A C G T A G T C A A T G C G C A T G T C A C G T A G T A C C G T A G C T A C G T A C T A G A T C G A C T G A C G T A C T G
A C G T A C G T A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:3
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:AAACTMACAAAGGGKG
-----RACAAWGG---
 G C T A C G T A G T C A A T G C G C A T G T C A C G T A G T A C C G T A G C T A C G T A C T A G A T C G A C T G A C G T A C T G
A C G T A C G T A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:4
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:AAACTMACAAAGGGKG
---AAAACAAAGG---
 G C T A C G T A G T C A A T G C G C A T G T C A C G T A G T A C C G T A G C T A C G T A C T A G A T C G A C T G A C G T A C T G
A C G T A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:5
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:AAACTMACAAAGGGKG
---VRRACAAWGG---
 G C T A C G T A G T C A A T G C G C A T G T C A C G T A G T A C C G T A G C T A C G T A C T A G A T C G A C T G A C G T A C T G
A C G T A C G T A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T A C G T

SOX10/MA0442.1/Jaspar

Match Rank:6
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:AAACTMACAAAGGGKG
------ACAAAG----
 G C T A C G T A G T C A A T G C G C A T G T C A C G T A G T A C C G T A G C T A C G T A C T A G A T C G A C T G A C G T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T A C G T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AAACTMACAAAGGGKG-
AGAAGAACAAAGGACTA
 G C T A C G T A G T C A A T G C G C A T G T C A C G T A G T A C C G T A G C T A C G T A C T A G A T C G A C T G A C G T A C T G A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:8
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:AAACTMACAAAGGGKG--
------ACAAAGGNBCCT
 G C T A C G T A G T C A A T G C G C A T G T C A C G T A G T A C C G T A G C T A C G T A C T A G A T C G A C T G A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:9
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:AAACTMACAAAGGGKG
---GGAACAAAGR---
 G C T A C G T A G T C A A T G C G C A T G T C A C G T A G T A C C G T A G C T A C G T A C T A G A T C G A C T G A C G T A C T G
A C G T A C G T A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AAACTMACAAAGGGKG-
ATAAGAACAAAGGACTA
 G C T A C G T A G T C A A T G C G C A T G T C A C G T A G T A C C G T A G C T A C G T A C T A G A T C G A C T G A C G T A C T G A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A