Information for 7-CTCWCTYAAMARG (Motif 10)

A G T C C G A T A G T C C G T A A G T C A C G T A G C T C G T A C G T A G T C A C G T A C T G A A C T G
Reverse Opposite:
A G T C A G C T A C G T A C G T A C G T A C G T C T G A C G T A C T A G C G A T A C T G C G T A A C T G
p-value:1e-11
log p-value:-2.555e+01
Information Content per bp:1.873
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets34.0 +/- 23.8bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:1
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CTCWCTYAAMARG
NSCACTYVAV---
 A G T C C G A T A G T C C G T A A G T C A C G T A G C T C G T A C G T A G T C A C G T A C T G A A C T G
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:2
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CTCWCTYAAMARG
AASCACTCAA----
 A C G T A G T C C G A T A G T C C G T A A G T C A C G T A G C T C G T A C G T A G T C A C G T A C T G A A C T G
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T A C G T A C G T

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:3
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CTCWCTYAAMARG
CTTAACCACTTAAGGAT
 A C G T A C G T A C G T A C G T A G T C C G A T A G T C C G T A A G T C A C G T A G C T C G T A C G T A G T C A C G T A C T G A A C T G
G T A C G C A T C G A T T C G A C T G A T A G C A G T C C G T A G T A C A C G T A G C T C G T A C G T A T A C G A C T G T C G A A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:4
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CTCWCTYAAMARG
ACCACTTAA----
 A G T C C G A T A G T C C G T A A G T C A C G T A G C T C G T A C G T A G T C A C G T A C T G A A C T G
T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A A C G T A C G T A C G T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:5
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CTCWCTYAAMARG
ACCACTTAA----
 A G T C C G A T A G T C C G T A A G T C A C G T A G C T C G T A C G T A G T C A C G T A C T G A A C T G
T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A A C G T A C G T A C G T A C G T

ISL2/MA0914.1/Jaspar

Match Rank:6
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CTCWCTYAAMARG
-GCACTTAA----
 A G T C C G A T A G T C C G T A A G T C A C G T A G C T C G T A C G T A G T C A C G T A C T G A A C T G
A C G T T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A A C G T A C G T A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:7
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CTCWCTYAAMARG
RSCACTYRAG---
 A G T C C G A T A G T C C G T A A G T C A C G T A G C T C G T A C G T A G T C A C G T A C T G A A C T G
C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G A C G T A C G T A C G T

PH0004.1_Nkx3-2/Jaspar

Match Rank:8
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----CTCWCTYAAMARG
CATAACCACTTAACAAC
 A C G T A C G T A C G T A C G T A G T C C G A T A G T C C G T A A G T C A C G T A G C T C G T A C G T A G T C A C G T A C T G A A C T G
T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C

PB0184.1_Tbp_2/Jaspar

Match Rank:9
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CTCWCTYAAMARG-
GNNCGCTTAAATCGG
 A C G T A G T C C G A T A G T C C G T A A G T C A C G T A G C T C G T A C G T A G T C A C G T A C T G A A C T G A C G T
C A T G T A C G C A G T G T A C A T C G T A G C C G A T C A G T C G T A C G T A C T G A G C A T A T G C T A C G A C T G

HOXC13/MA0907.1/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CTCWCTYAAMARG
-GCTCGTAAAAA-
 A G T C C G A T A G T C C G T A A G T C A C G T A G C T C G T A C G T A G T C A C G T A C T G A A C T G
A C G T A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A A C G T