Information for 5-AGTGGCTTAT (Motif 18)

C G T A T A C G A C G T C T A G C T A G A G T C A C G T A G C T T C G A A C G T
Reverse Opposite:
G T C A A G C T C T G A C G T A C T A G A G T C A G T C C G T A A T G C C G A T
p-value:1e-7
log p-value:-1.737e+01
Information Content per bp:1.834
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif2.50%
Number of Background Sequences with motif179.8
Percentage of Background Sequences with motif0.36%
Average Position of motif in Targets56.4 +/- 23.0bp
Average Position of motif in Background49.1 +/- 27.7bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0171.1_Nkx2-1/Jaspar

Match Rank:1
Score:0.69
Offset:-7
Orientation:reverse strand
Alignment:-------AGTGGCTTAT
AANTTCAAGTGGCTTN-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A T A C G A C G T C T A G C T A G A G T C A C G T A G C T T C G A A C G T
C G T A C G T A C A G T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G T A G C G A C T A C G T T C G A A C G T

PH0113.1_Nkx2-4/Jaspar

Match Rank:2
Score:0.69
Offset:-7
Orientation:reverse strand
Alignment:-------AGTGGCTTAT
AATTTCAAGTGGCTTN-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A T A C G A C G T C T A G C T A G A G T C A C G T A G C T T C G A A C G T
C T G A C G T A C G A T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G A G T C G C A T G A C T C G T A A C G T

PH0115.1_Nkx2-6/Jaspar

Match Rank:3
Score:0.69
Offset:-7
Orientation:reverse strand
Alignment:-------AGTGGCTTAT
AATNTTAAGTGGNTNN-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A T A C G A C G T C T A G C T A G A G T C A C G T A G C T T C G A A C G T
C T G A C T G A C G A T A C T G G C A T A G C T C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T G C T A A C G T

PH0114.1_Nkx2-5/Jaspar

Match Rank:4
Score:0.66
Offset:-7
Orientation:reverse strand
Alignment:-------AGTGGCTTAT
AAATTCAAGTGGNTTN-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A T A C G A C G T C T A G C T A G A G T C A C G T A G C T T C G A A C G T
C T G A C T G A C G T A A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T C G T A A C G T

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:5
Score:0.66
Offset:-7
Orientation:reverse strand
Alignment:-------AGTGGCTTAT
NTNNTTAAGTGGNTNAN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A T A C G A C G T C T A G C T A G A G T C A C G T A G C T T C G A A C G T
T C G A A G C T A G T C A T G C G C A T C G A T C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G T A C A T G

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:6
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---AGTGGCTTAT
TTRAGTGSYK---
 A C G T A C G T A C G T C G T A T A C G A C G T C T A G C T A G A G T C A C G T A G C T T C G A A C G T
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T A C G T A C G T A C G T

RHOXF1/MA0719.1/Jaspar

Match Rank:7
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:AGTGGCTTAT
--NGGATTAN
 C G T A T A C G A C G T C T A G C T A G A G T C A C G T A G C T T C G A A C G T
A C G T A C G T C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T

POL004.1_CCAAT-box/Jaspar

Match Rank:8
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--AGTGGCTTAT
TGATTGGCTANN
 A C G T A C G T C G T A T A C G A C G T C T A G C T A G A G T C A C G T A G C T T C G A A C G T
A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

Crx/MA0467.1/Jaspar

Match Rank:9
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AGTGGCTTAT
AAGAGGATTAG
 A C G T C G T A T A C G A C G T C T A G C T A G A G T C A C G T A G C T T C G A A C G T
T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G

JUND/MA0491.1/Jaspar

Match Rank:10
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AGTGGCTTAT-
GGTGACTCATC
 C G T A T A C G A C G T C T A G C T A G A G T C A C G T A G C T T C G A A C G T A C G T
C T A G T C A G A C G T A C T G C G T A A T G C A C G T G T A C C G T A A G C T T A G C