Information for 4-CGCACTAATT (Motif 9)

A G T C A C T G A G T C C T G A A G T C A C G T C G T A C G T A A G C T A C G T
Reverse Opposite:
C G T A C T G A A C G T A C G T C G T A A C T G A G C T C T A G G T A C T A C G
p-value:1e-9
log p-value:-2.177e+01
Information Content per bp:1.870
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.91%
Number of Background Sequences with motif14.4
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets41.4 +/- 33.4bp
Average Position of motif in Background42.7 +/- 25.5bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0039.1_Mnx1/Jaspar

Match Rank:1
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-CGCACTAATT-----
NNNCACTAATTANTNN
 A C G T A G T C A C T G A G T C C T G A A G T C A C G T C G T A C G T A A G C T A C G T A C G T A C G T A C G T A C G T A C G T
A T G C C T A G A T G C G A T C T G C A A T G C G A C T G T C A C G T A G A C T A C G T C T G A T A C G A C G T T G C A T G A C

HOXA5/MA0158.1/Jaspar

Match Rank:2
Score:0.78
Offset:2
Orientation:forward strand
Alignment:CGCACTAATT
--CACTAATT
 A G T C A C T G A G T C C T G A A G T C A C G T C G T A C G T A A G C T A C G T
A C G T A C G T G T A C C T G A A T G C C G A T C G T A C T G A A C G T A C G T

PH0127.1_Nobox/Jaspar

Match Rank:3
Score:0.78
Offset:0
Orientation:forward strand
Alignment:CGCACTAATT-------
CGCGCTAATTAGGTATC
 A G T C A C T G A G T C C T G A A G T C A C G T C G T A C G T A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T A G C A T C G A T G C T C A G A G T C G A C T C T G A C G T A G C A T A G C T C T G A T C A G A C T G G C A T C G T A G A C T A T G C

PH0109.1_Nkx1-1/Jaspar

Match Rank:4
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-CGCACTAATT------
NCCCACTAATTAGCGCA
 A C G T A G T C A C T G A G T C C T G A A G T C A C G T C G T A C G T A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A G C T G T A C A T G C G A T C T C G A A G T C G A C T G T C A C G T A C G A T A C G T C T G A T C A G A G T C A C T G A T G C G C T A

Alx4/MA0853.1/Jaspar

Match Rank:5
Score:0.77
Offset:0
Orientation:forward strand
Alignment:CGCACTAATT-------
CGCATTAATTAATTACC
 A G T C A C T G A G T C C T G A A G T C A C G T C G T A C G T A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T G A C A T C G G A T C C T G A G A C T G A C T T C G A C G T A G A C T A C G T C T G A C T G A A G C T G C A T G T C A A T G C A G T C

PH0002.1_Alx4/Jaspar

Match Rank:6
Score:0.77
Offset:0
Orientation:forward strand
Alignment:CGCACTAATT-------
CGCATTAATTAATTACC
 A G T C A C T G A G T C C T G A A G T C A C G T C G T A C G T A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T G A C A T C G G A T C C T G A G A C T G A C T T C G A C G T A G A C T A C G T C T G A C T G A A G C T G C A T G T C A A T G C A G T C

Alx1/MA0854.1/Jaspar

Match Rank:7
Score:0.77
Offset:0
Orientation:forward strand
Alignment:CGCACTAATT-------
CGAATTAATTAATCACC
 A G T C A C T G A G T C C T G A A G T C A C G T C G T A C G T A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A T C A T C G G T C A C T G A G A C T G A C T C T G A C G T A G A C T A G C T C T G A C T G A G A C T G A T C G T C A G A T C G A T C

PH0010.1_Alx1_1/Jaspar

Match Rank:8
Score:0.77
Offset:0
Orientation:forward strand
Alignment:CGCACTAATT-------
CGAATTAATTAATCACC
 A G T C A C T G A G T C C T G A A G T C A C G T C G T A C G T A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A T C A T C G G T C A C T G A G A C T G A C T C T G A C G T A G A C T A G C T C T G A C T G A G A C T G A T C G T C A G A T C G A T C

LHX2/MA0700.1/Jaspar

Match Rank:9
Score:0.76
Offset:3
Orientation:forward strand
Alignment:CGCACTAATT---
---ACTAATTAAC
 A G T C A C T G A G T C C T G A A G T C A C G T C G T A C G T A A G C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A A G T C G A C T G T C A C T G A A C G T A C G T C T G A C T G A A T G C

VSX2/MA0726.1/Jaspar

Match Rank:10
Score:0.76
Offset:4
Orientation:forward strand
Alignment:CGCACTAATT--
----CTAATTAG
 A G T C A C T G A G T C C T G A A G T C A C G T C G T A C G T A A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C G A C T G C T A T G C A G A C T G C A T C T G A A C T G