Information for 2-AGAGAAAACAAAG (Motif 2)

C G T A A C T G C G T A A C T G G T C A C G T A C G T A C T G A A G T C C G T A G T C A C G T A C T A G
Reverse Opposite:
A G T C A C G T A C G T A C G T A C T G A G C T A C G T A C G T A C G T A G T C A C G T A G T C A C G T
p-value:1e-11
log p-value:-2.648e+01
Information Content per bp:1.913
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets30.5 +/- 22.9bp
Average Position of motif in Background59.1 +/- 6.6bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FOXP1/MA0481.1/Jaspar

Match Rank:1
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--AGAGAAAACAAAG
CAAAAGTAAACAAAG
 A C G T A C G T C G T A A C T G C G T A A C T G G T C A C G T A C G T A C T G A A G T C C G T A G T C A C G T A C T A G
G T A C G C T A C G T A T C G A C T G A T C A G G C A T C G T A C G T A C G T A T G A C C G T A T G C A C G T A T C A G

PB0016.1_Foxj1_1/Jaspar

Match Rank:2
Score:0.71
Offset:0
Orientation:forward strand
Alignment:AGAGAAAACAAAG---
AAAGTAAACAAAAATT
 C G T A A C T G C G T A A C T G G T C A C G T A C G T A C T G A A G T C C G T A G T C A C G T A C T A G A C G T A C G T A C G T
G C T A C G A T G C T A C T A G G A C T G T C A G C T A C G T A G A T C C G T A G T C A C G T A G T C A C G T A C A G T C A G T

Sox3/MA0514.1/Jaspar

Match Rank:3
Score:0.69
Offset:4
Orientation:reverse strand
Alignment:AGAGAAAACAAAG-
----AAAACAAAGG
 C G T A A C T G C G T A A C T G G T C A C G T A C G T A C T G A A G T C C G T A G T C A C G T A C T A G A C G T
A C G T A C G T A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

Foxj3/MA0851.1/Jaspar

Match Rank:4
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--AGAGAAAACAAAG--
AAAAAGTAAACAAACAC
 A C G T A C G T C G T A A C T G C G T A A C T G G T C A C G T A C G T A C T G A A G T C C G T A G T C A C G T A C T A G A C G T A C G T
G C T A C T G A G T C A C G T A C T G A T C A G G A C T G T C A G C T A C G T A A G T C C G T A G C T A G C T A T A G C T G A C G T A C

PB0017.1_Foxj3_1/Jaspar

Match Rank:5
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--AGAGAAAACAAAG--
AAAAAGTAAACAAACAC
 A C G T A C G T C G T A A C T G C G T A A C T G G T C A C G T A C G T A C T G A A G T C C G T A G T C A C G T A C T A G A C G T A C G T
G C T A C T G A G T C A C G T A C T G A T C A G G A C T G T C A G C T A C G T A A G T C C G T A G C T A G C T A T A G C T G A C G T A C

FOXP2/MA0593.1/Jaspar

Match Rank:6
Score:0.67
Offset:1
Orientation:forward strand
Alignment:AGAGAAAACAAAG
-AAGTAAACAAA-
 C G T A A C T G C G T A A C T G G T C A C G T A C G T A C T G A A G T C C G T A G T C A C G T A C T A G
A C G T C T G A C G T A C T A G C G A T C G T A C G T A C G T A A G T C C G T A T C G A C T G A A C G T

PB0015.1_Foxa2_1/Jaspar

Match Rank:7
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--AGAGAAAACAAAG--
AAAAAGTAAACAAAGAC
 A C G T A C G T C G T A A C T G C G T A A C T G G T C A C G T A C G T A C T G A A G T C C G T A G T C A C G T A C T A G A C G T A C G T
G C T A C G T A G C T A C G T A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A G C T A C G T A T A C G C T G A A G T C

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:8
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:AGAGAAAACAAAG-
--AGAAACGAAAGT
 C G T A A C T G C G T A A C T G G T C A C G T A C G T A C T G A A G T C C G T A G T C A C G T A C T A G A C G T
A C G T A C G T T C G A C T A G C T G A C G T A C G T A A G T C T A C G C G T A C G T A C G T A A T C G A C G T

FOXA1/MA0148.3/Jaspar

Match Rank:9
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-AGAGAAAACAAAG-
CAAAGTAAACANNNN
 A C G T C G T A A C T G C G T A A C T G G T C A C G T A C G T A C T G A A G T C C G T A G T C A C G T A C T A G A C G T
G T A C G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C G C T A C G A T T A C G T C A G C T G A

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AGAGAAAACAAAG
AAAGTAAACA---
 C G T A A C T G C G T A A C T G G T C A C G T A C G T A C T G A A G T C C G T A G T C A C G T A C T A G
G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A A C G T A C G T A C G T