Information for 5-CGAGCCATAA (Motif 11)

T A G C A C T G C G T A A C T G A T G C A G T C C G T A A C G T C G T A C G T A
Reverse Opposite:
A C G T A C G T C G T A A C G T A C T G A T C G A G T C A C G T G T A C A T C G
p-value:1e-9
log p-value:-2.103e+01
Information Content per bp:1.894
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif5.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets45.3 +/- 33.7bp
Average Position of motif in Background70.0 +/- 23.8bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX2/MA0465.1/Jaspar

Match Rank:1
Score:0.75
Offset:1
Orientation:forward strand
Alignment:CGAGCCATAA--
-AAGCCATAAAA
 T A G C A C T G C G T A A C T G A T G C A G T C C G T A A C G T C G T A C G T A A C G T A C G T
A C G T T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A

PH0064.1_Hoxb9/Jaspar

Match Rank:2
Score:0.72
Offset:0
Orientation:forward strand
Alignment:CGAGCCATAA------
AGAGCCATAAAATTCG
 T A G C A C T G C G T A A C T G A T G C A G T C C G T A A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:3
Score:0.69
Offset:3
Orientation:forward strand
Alignment:CGAGCCATAA---
---GTCATAAAAN
 T A G C A C T G C G T A A C T G A T G C A G T C C G T A A C G T C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

CDX1/MA0878.1/Jaspar

Match Rank:4
Score:0.69
Offset:3
Orientation:forward strand
Alignment:CGAGCCATAA--
---GCAATAAAA
 T A G C A C T G C G T A A C T G A T G C A G T C C G T A A C G T C G T A C G T A A C G T A C G T
A C G T A C G T A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:5
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CGAGCCATAA----
--NGYCATAAAWCH
 T A G C A C T G C G T A A C T G A T G C A G T C C G T A A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:6
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CGAGCCATAA----
--GGCCATAAATCA
 T A G C A C T G C G T A A C T G A T G C A G T C C G T A A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CGAGCCATAA--
--GGCCATTAAC
 T A G C A C T G C G T A A C T G A T G C A G T C C G T A A C G T C G T A C G T A A C G T A C G T
A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

HOXA10/MA0899.1/Jaspar

Match Rank:8
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CGAGCCATAA---
--GGTAATAAAAA
 T A G C A C T G C G T A A C T G A T G C A G T C C G T A A C G T C G T A C G T A A C G T A C G T A C G T
A C G T A C G T C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

PH0013.1_Cdx2/Jaspar

Match Rank:9
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CGAGCCATAA-----
AAAGGTAATAAAATTT
 A C G T T A G C A C T G C G T A A C T G A T G C A G T C C G T A A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:10
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CGAGCCATAA----
--GGCCATAAATCA
 T A G C A C T G C G T A A C T G A T G C A G T C C G T A A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A