Information for 5-GAGCACAGHCAGG (Motif 7)

A C T G C T G A A C T G A T G C C G T A A G T C C G T A A C T G G A T C A G T C C G T A C T A G A C T G
Reverse Opposite:
A G T C A G T C C G A T A C T G C T A G A G T C A C G T A C T G A C G T A T C G G T A C A G C T A G T C
p-value:1e-8
log p-value:-1.990e+01
Information Content per bp:1.864
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif2.26%
Number of Background Sequences with motif11.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets54.2 +/- 24.6bp
Average Position of motif in Background48.8 +/- 25.2bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:GAGCACAGHCAGG
---CACAGN----
 A C T G C T G A A C T G A T G C C G T A A G T C C G T A A C T G G A T C A G T C C G T A C T A G A C T G
A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T

PB0099.1_Zfp691_1/Jaspar

Match Rank:2
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----GAGCACAGHCAGG
NNNNTGAGCACTGTNNG-
 A C G T A C G T A C G T A C G T A C G T A C T G C T G A A C T G A T G C C G T A A G T C C G T A A C T G G A T C A G T C C G T A C T A G A C T G
G C T A G A C T C G T A T C A G A C G T A C T G C T G A A C T G A G T C C G T A G T A C A G C T C A T G A G C T C A G T G T A C T C A G A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:GAGCACAGHCAGG
----BCAGACWA-
 A C T G C T G A A C T G A T G C C G T A A G T C C G T A A C T G G A T C A G T C C G T A C T A G A C T G
A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:4
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GAGCACAGHCAGG--
VAGRACAKNCTGTBC
 A C T G C T G A A C T G A T G C C G T A A G T C C G T A A C T G G A T C A G T C C G T A C T A G A C T G A C G T A C G T
T G A C C T G A C T A G T C G A C T G A A T G C C G T A A C T G G C A T G T A C G C A T A T C G G C A T A G C T G A T C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:GAGCACAGHCAGG
----CCAGACAG-
 A C T G C T G A A C T G A T G C C G T A A G T C C G T A A C T G G A T C A G T C C G T A C T A G A C T G
A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:6
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GAGCACAGHCAGG
AGGTGNCAGACAG-
 A C G T A C T G C T G A A C T G A T G C C G T A A G T C C G T A A C T G G A T C A G T C C G T A C T A G A C T G
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:GAGCACAGHCAGG-
----CCAGACRSVB
 A C T G C T G A A C T G A T G C C G T A A G T C C G T A A C T G G A T C A G T C C G T A C T A G A C T G A C G T
A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

PB0207.1_Zic3_2/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GAGCACAGHCAGG--
GAGCACAGCAGGACA
 A C T G C T G A A C T G A T G C C G T A A G T C C G T A A C T G G A T C A G T C C G T A C T A G A C T G A C G T A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:9
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GAGCACAGHCAGG---
NAGAACAGNCTGTNCT
 A C T G C T G A A C T G A T G C C G T A A G T C C G T A A C T G G A T C A G T C C G T A C T A G A C T G A C G T A C G T A C G T
T C G A C T G A C T A G T C G A C G T A A T G C C G T A A T C G G C A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GAGCACAGHCAGG
GGGAGGACNG-----
 A C G T A C G T A C T G C T G A A C T G A T G C C G T A A G T C C G T A A C T G G A T C A G T C C G T A C T A G A C T G
C T A G A C T G A C T G C G T A A C T G A T C G C G T A A T G C A G C T T A C G A C G T A C G T A C G T A C G T A C G T