Information for 1-GGGCCTKTGCTCATTC (Motif 1)

A C T G A C T G A C T G T A G C A G T C A C G T A C G T A C G T C T A G A G T C G C A T A G T C C G T A A G C T C A G T A G T C
Reverse Opposite:
T C A G G T C A C T G A G A C T C T A G C G T A C T A G A G T C C G T A G T C A C G T A A C T G A C T G A G T C G T A C A G T C
p-value:1e-16
log p-value:-3.908e+01
Information Content per bp:1.751
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif2.71%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.3 +/- 16.4bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4G/MA0484.1/Jaspar

Match Rank:1
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GGGCCTKTGCTCATTC
TGGACTTTGNNCTCN-
 A C T G A C T G A C T G T A G C A G T C A C G T A C G T A C G T C T A G A G T C G C A T A G T C C G T A A G C T C A G T A G T C
C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T T C A G T C A G G T C A G A T C G A C T A G T C G C A T A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:2
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GGGCCTKTGCTCATTC
TGGACTTTGNNCTNTG
 A C T G A C T G A C T G T A G C A G T C A C G T A C G T A C G T C T A G A G T C G C A T A G T C C G T A A G C T C A G T A G T C
C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C G A C T A G T C C G A T C A T G

MF0003.1_REL_class/Jaspar

Match Rank:3
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GGGCCTKTGCTCATTC
GGGGATTTCC------
 A C T G A C T G A C T G T A G C A G T C A C G T A C G T A C G T C T A G A G T C G C A T A G T C C G T A A G C T C A G T A G T C
A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C A C G T A C G T A C G T A C G T A C G T A C G T

Tcf7/MA0769.1/Jaspar

Match Rank:4
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:GGGCCTKTGCTCATTC
---CCTTTGATCTTT-
 A C T G A C T G A C T G T A G C A G T C A C G T A C G T A C G T C T A G A G T C G C A T A G T C C G T A A G C T C A G T A G T C
A C G T A C G T A C G T A G T C A G T C C G A T A G C T G C A T A T C G T G C A G C A T T A G C G C A T G A C T G A C T A C G T

RELA/MA0107.1/Jaspar

Match Rank:5
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GGGCCTKTGCTCATTC
GGGAATTTCC------
 A C T G A C T G A C T G T A G C A G T C A C G T A C G T A C G T C T A G A G T C G C A T A G T C C G T A A G C T C A G T A G T C
A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T

PB0026.1_Gm397_1/Jaspar

Match Rank:6
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GGGCCTKTGCTCATTC-
NNGTATGTGCACATNNN
 A C T G A C T G A C T G T A G C A G T C A C G T A C G T A C G T C T A G A G T C G C A T A G T C C G T A A G C T C A G T A G T C A C G T
C T G A G T A C C A T G C A G T T C G A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A G C A T G T A C C G A T C A T G

REL/MA0101.1/Jaspar

Match Rank:7
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GGGCCTKTGCTCATTC
GGGGATTTCC------
 A C T G A C T G A C T G T A G C A G T C A C G T A C G T A C G T C T A G A G T C G C A T A G T C C G T A A G C T C A G T A G T C
A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T A C G T A C G T A C G T A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:8
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GGGCCTKTGCTCATTC
GGGAATTTCC------
 A C T G A C T G A C T G T A G C A G T C A C G T A C G T A C G T C T A G A G T C G C A T A G T C C G T A A G C T C A G T A G T C
A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T A C G T A C G T A C G T A C G T A C G T

PB0104.1_Zscan4_1/Jaspar

Match Rank:9
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GGGCCTKTGCTCATTC--
-TACATGTGCACATAAAA
 A C T G A C T G A C T G T A G C A G T C A C G T A C G T A C G T C T A G A G T C G C A T A G T C C G T A A G C T C A G T A G T C A C G T A C G T
A C G T C A G T G T C A T G A C C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A A G C T G C T A G C T A C G T A G T C A

LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer

Match Rank:10
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---GGGCCTKTGCTCATTC
NRRGGGTCTT---------
 A C G T A C G T A C G T A C T G A C T G A C T G T A G C A G T C A C G T A C G T A C G T C T A G A G T C G C A T A G T C C G T A A G C T C A G T A G T C
A C T G T C G A C T A G A C T G A C T G A C T G A C G T A G T C A C G T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T