Information for 25-GAGKSTCAGARGRAGG (Motif 40)

A C T G C G T A A C T G A C T G A T C G A C G T A G T C C G T A A T C G C G T A C T A G A C T G C T G A C G T A A C T G A C T G
Reverse Opposite:
A G T C A G T C A C G T A G C T A G T C A G T C A C G T A T G C A C G T A C T G C G T A A T G C G T A C A G T C A C G T A G T C
p-value:1e-3
log p-value:-8.946e+00
Information Content per bp:1.899
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.27%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.7 +/- 12.6bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GAGKSTCAGARGRAGG----
SMCAGTCWGAKGGAGGAGGC
 A C T G C G T A A C T G A C T G A T C G A C G T A G T C C G T A A T C G C G T A C T A G A C T G C T G A C G T A A C T G A C T G A C G T A C G T A C G T A C G T
A T C G T G A C A T G C C T G A T C A G G A C T A G T C C G A T T C A G T C G A C A T G C T A G C T A G C G T A C T A G C T A G C T G A C T A G C T A G A T G C

RARA::RXRA/MA0159.1/Jaspar

Match Rank:2
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GAGKSTCAGARGRAGG---
--AGGTCACGGAGAGGTCA
 A C T G C G T A A C T G A C T G A T C G A C G T A G T C C G T A A T C G C G T A C T A G A C T G C T G A C G T A A C T G A C T G A C G T A C G T A C G T
A C G T A C G T C T G A A C T G C A T G A C G T A T G C C T G A A G C T T A C G T C A G C T G A T A C G T C G A A C T G A C T G C A G T A T G C C G T A

ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GAGKSTCAGARGRAGG---
YCAGGCWCAGTACCAGGCTC
 A C G T A C T G C G T A A C T G A C T G A T C G A C G T A G T C C G T A A T C G C G T A C T A G A C T G C T G A C G T A A C T G A C T G A C G T A C G T A C G T
A G T C T G A C G C T A C T A G C T A G G A T C G C A T A T G C C G T A C T A G C A G T T C G A A T G C A G T C C G T A C A T G C T A G G T A C G A C T A T G C

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:4
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GAGKSTCAGARGRAGG----
--RGGTCADNNAGAGGTCAV
 A C T G C G T A A C T G A C T G A T C G A C G T A G T C C G T A A T C G C G T A C T A G A C T G C T G A C G T A A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T C T G A C A T G A C T G A C G T A T G C C G T A C A T G T A C G A T G C G C T A T A C G C T G A C T A G A C T G A C G T A T G C C G T A T A G C

PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:5
Score:0.52
Offset:7
Orientation:forward strand
Alignment:GAGKSTCAGARGRAGG-
-------AGAGGAAGTG
 A C T G C G T A A C T G A C T G A T C G A C G T A G T C C G T A A T C G C G T A C T A G A C T G C T G A C G T A A C T G A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A T A C G T C G A A C T G A C T G C G T A C G T A T A C G A G C T T A C G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:GAGKSTCAGARGRAGG--
---DCHCAGCAGGRGGCC
 A C T G C G T A A C T G A C T G A T C G A C G T A G T C C G T A A T C G C G T A C T A G A C T G C T G A C G T A A C T G A C T G A C G T A C G T
A C G T A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

ZNF263/MA0528.1/Jaspar

Match Rank:7
Score:0.51
Offset:-4
Orientation:forward strand
Alignment:----GAGKSTCAGARGRAGG-
GGAGGAGGAGGGGGAGGAGGA
 A C G T A C G T A C G T A C G T A C T G C G T A A C T G A C T G A T C G A C G T A G T C C G T A A T C G C G T A C T A G A C T G C T G A C G T A A C T G A C T G A C G T
C T A G C T A G C T G A C A T G T A C G G C T A C A T G T C A G T C G A T C A G C T A G C T A G C T A G T C A G C T G A C T A G C T A G C T G A C T A G C T A G C T G A

SPIB/MA0081.1/Jaspar

Match Rank:8
Score:0.51
Offset:7
Orientation:forward strand
Alignment:GAGKSTCAGARGRAGG
-------AGAGGAA--
 A C T G C G T A A C T G A C T G A T C G A C G T A G T C C G T A A T C G C G T A C T A G A C T G C T G A C G T A A C T G A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A T A C G T G C A C T A G C A T G C G T A C G T A A C G T A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:9
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-GAGKSTCAGARGRAGG
CAAAGGTCAAGGG----
 A C G T A C T G C G T A A C T G A C T G A T C G A C G T A G T C C G T A A T C G C G T A C T A G A C T G C T G A C G T A A C T G A C T G
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.50
Offset:4
Orientation:forward strand
Alignment:GAGKSTCAGARGRAGG
----CACAGCAGGGGG
 A C T G C G T A A C T G A C T G A T C G A C G T A G T C C G T A A T C G C G T A C T A G A C T G C T G A C G T A A C T G A C T G
A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G