Information for 2-AGACAGGGAG (Motif 16)

G T C A T A C G G T C A T G A C C G T A A T C G T A C G T A C G T C G A T A C G
Reverse Opposite:
A T G C A G C T A T G C A T G C T A G C G C A T A C T G C A G T A T G C C A G T
p-value:1e-9
log p-value:-2.124e+01
Information Content per bp:1.536
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif4.40%
Number of Background Sequences with motif563.8
Percentage of Background Sequences with motif1.22%
Average Position of motif in Targets61.0 +/- 20.5bp
Average Position of motif in Background47.8 +/- 36.6bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AGACAGGGAG
CCAGACAG----
 A C G T A C G T G T C A T A C G G T C A T G A C C G T A A T C G T A C G T A C G T C G A T A C G
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:2
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AGACAGGGAG-
-AACAGGAAGT
 G T C A T A C G G T C A T G A C C G T A A T C G T A C G T A C G T C G A T A C G A C G T
A C G T T G C A C T G A A T G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--AGACAGGGAG
BCAGACWA----
 A C G T A C G T G T C A T A C G G T C A T G A C C G T A A T C G T A C G T A C G T C G A T A C G
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--AGACAGGGAG
CCAGACRSVB--
 A C G T A C G T G T C A T A C G G T C A T G A C C G T A A T C G T A C G T A C G T C G A T A C G
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:5
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:AGACAGGGAG-
-----CGGAGC
 G T C A T A C G G T C A T G A C C G T A A T C G T A C G T A C G T C G A T A C G A C G T
A C G T A C G T A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:6
Score:0.55
Offset:2
Orientation:forward strand
Alignment:AGACAGGGAG--
--ACAGGAAGTG
 G T C A T A C G G T C A T G A C C G T A A T C G T A C G T A C G T C G A T A C G A C G T A C G T
A C G T A C G T T C G A T A G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T T C A G

POL009.1_DCE_S_II/Jaspar

Match Rank:7
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:AGACAGGGAG
-CACAGN---
 G T C A T A C G G T C A T G A C C G T A A T C G T A C G T A C G T C G A T A C G
A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:AGACAGGGAG-----
-----GGGAGGACNG
 G T C A T A C G G T C A T G A C C G T A A T C G T A C G T A C G T C G A T A C G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G A C T G A C T G C G T A A C T G A T C G C G T A A T G C A G C T T A C G

INSM1/MA0155.1/Jaspar

Match Rank:9
Score:0.53
Offset:0
Orientation:forward strand
Alignment:AGACAGGGAG--
TGTCAGGGGGCG
 G T C A T A C G G T C A T G A C C G T A A T C G T A C G T A C G T C G A T A C G A C G T A C G T
C A G T A C T G A G C T G T A C C G T A A C T G A T C G A C T G A C T G A C T G G A T C C T A G

ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer

Match Rank:10
Score:0.53
Offset:2
Orientation:forward strand
Alignment:AGACAGGGAG--
--ACAGGAAGTG
 G T C A T A C G G T C A T G A C C G T A A T C G T A C G T A C G T C G A T A C G A C G T A C G T
A C G T A C G T T C G A T A G C T G C A A C T G A C T G C G T A C G T A C T A G G A C T T A C G