Information for 1-CARTAGGGARCCATKG (Motif 1)

A G T C C G T A T C G A A C G T C T G A A C T G A C T G A C T G C G T A C T A G A G T C A G T C C G T A A G C T C A T G A C T G
Reverse Opposite:
A G T C G T A C C T G A A C G T A C T G A C T G A G T C A C G T A G T C A G T C A G T C A G C T C G T A A G C T A C G T A C T G
p-value:1e-13
log p-value:-3.209e+01
Information Content per bp:1.906
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif2.38%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets37.0 +/- 10.0bp
Average Position of motif in Background56.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.79
Offset:-3
Orientation:reverse strand
Alignment:---CARTAGGGARCCATKG------
RGGCAMTAGGGAGCCATRGAAGGTK
 A C G T A C G T A C G T A G T C C G T A T C G A A C G T C T G A A C T G A C T G A C T G C G T A C T A G A G T C A G T C C G T A A G C T C A T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
C T A G C T A G C T A G A G T C T C G A T G C A G A C T C T G A A C T G A C T G A C T G C G T A A C T G A G T C G A T C C G T A A G C T C T A G A T C G G T C A C T G A C T A G T C A G A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:2
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:CARTAGGGARCCATKG
-----CGGAGC-----
 A G T C C G T A T C G A A C G T C T G A A C T G A C T G A C T G C G T A C T A G A G T C A G T C C G T A A G C T C A T G A C T G
A C G T A C G T A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:3
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---CARTAGGGARCCATKG
DCHCAGCAGGRGGCC----
 A C G T A C G T A C G T A G T C C G T A T C G A A C G T C T G A A C T G A C T G A C T G C G T A C T A G A G T C A G T C C G T A A G C T C A T G A C T G
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T A C G T A C G T A C G T

SOX9/MA0077.1/Jaspar

Match Rank:4
Score:0.51
Offset:7
Orientation:reverse strand
Alignment:CARTAGGGARCCATKG
-------GAACAATGG
 A G T C C G T A T C G A A C G T C T G A A C T G A C T G A C T G C G T A C T A G A G T C A G T C C G T A A G C T C A T G A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G

PB0128.1_Gcm1_2/Jaspar

Match Rank:5
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---CARTAGGGARCCATKG
TGCGCATAGGGGAGGAG--
 A C G T A C G T A C G T A G T C C G T A T C G A A C G T C T G A A C T G A C T G A C T G C G T A C T A G A G T C A G T C C G T A A G C T C A T G A C T G
C G A T C A T G A T G C T A C G G T A C T C G A A G C T T C G A C A T G A C T G A C T G A C T G T C G A A T C G T C A G G T C A A C T G A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--CARTAGGGARCCATKG
CACAGCAGGGGG------
 A C G T A C G T A G T C C G T A T C G A A C G T C T G A A C T G A C T G A C T G C G T A C T A G A G T C A G T C C G T A A G C T C A T G A C T G
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T A C G T A C G T A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.50
Offset:5
Orientation:forward strand
Alignment:CARTAGGGARCCATKG---
-----NGTTGCCATGGCAA
 A G T C C G T A T C G A A C G T C T G A A C T G A C T G A C T G C G T A C T A G A G T C A G T C C G T A A G C T C A T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.49
Offset:7
Orientation:reverse strand
Alignment:CARTAGGGARCCATKG-
-------GAACAATGGN
 A G T C C G T A T C G A A C G T C T G A A C T G A C T G A C T G C G T A C T A G A G T C A G T C C G T A A G C T C A T G A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

PB0106.1_Arid5a_2/Jaspar

Match Rank:9
Score:0.49
Offset:-4
Orientation:forward strand
Alignment:----CARTAGGGARCCATKG
CATACAATACGAAATAA---
 A C G T A C G T A C G T A C G T A G T C C G T A T C G A A C G T C T G A A C T G A C T G A C T G C G T A C T A G A G T C A G T C C G T A A G C T C A T G A C T G
A T G C C T A G G A C T C G T A T G A C C G T A T G C A A C G T T G C A T A G C T A C G C T G A C T G A C G T A A G C T T C G A T C G A A C G T A C G T A C G T

PB0065.1_Sox15_1/Jaspar

Match Rank:10
Score:0.49
Offset:3
Orientation:forward strand
Alignment:CARTAGGGARCCATKG----
---TAGTGAACAATAGATTT
 A G T C C G T A T C G A A C G T C T G A A C T G A C T G A C T G C G T A C T A G A G T C A G T C C G T A A G C T C A T G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C A T C T A G C A T G C G A T C A T G C T G A C G T A G A T C C G T A C G T A G C A T C G T A C T A G C T G A A G C T G C A T A C G T