Information for 3-CATGTCTGCCAGC (Motif 5)

A G T C C T G A A G C T A C T G C G A T A T G C A C G T A T C G T A G C A T G C C G T A A C T G A G T C
Reverse Opposite:
A C T G A G T C C G A T A T C G A C T G A T G C C G T A A T C G G C T A A G T C C T G A A G C T C T A G
p-value:1e-11
log p-value:-2.677e+01
Information Content per bp:1.833
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.99%
Number of Background Sequences with motif22.1
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets60.4 +/- 22.4bp
Average Position of motif in Background51.3 +/- 34.5bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.69
Offset:1
Orientation:forward strand
Alignment:CATGTCTGCCAGC-
-CTGTCTGTCACCT
 A G T C C T G A A G C T A C T G C G A T A T G C A C G T A T C G T A G C A T G C C G T A A C T G A G T C A C G T
A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:CATGTCTGCCAGC-
--TGTCTGDCACCT
 A G T C C T G A A G C T A C T G C G A T A T G C A C G T A T C G T A G C A T G C C G T A A C T G A G T C A C G T
A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:3
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:CATGTCTGCCAGC-
--TGAGTGACAGSC
 A G T C C T G A A G C T A C T G C G A T A T G C A C G T A T C G T A G C A T G C C G T A A C T G A G T C A C G T
A C G T A C G T C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CATGTCTGCCAGC
-NTGATTGACAGN
 A G T C C T G A A G C T A C T G C G A T A T G C A C G T A T C G T A G C A T G C C G T A A C T G A G T C
A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:5
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CATGTCTGCCAGC
-BTGABTGACAGS
 A G T C C T G A A G C T A C T G C G A T A T G C A C G T A T C G T A G C A T G C C G T A A C T G A G T C
A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:6
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CATGTCTGCCAGC
GTCATGCHTGRCTGS
 A C G T A C G T A G T C C T G A A G C T A C T G C G A T A T G C A C G T A T C G T A G C A T G C C G T A A C T G A G T C
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.59
Offset:5
Orientation:forward strand
Alignment:CATGTCTGCCAGC
-----TTGCCAAG
 A G T C C T G A A G C T A C T G C G A T A T G C A C G T A T C G T A G C A T G C C G T A A C T G A G T C
A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:8
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CATGTCTGCCAGC
---VGCTGWCAVB
 A G T C C T G A A G C T A C T G C G A T A T G C A C G T A T C G T A G C A T G C C G T A A C T G A G T C
A C G T A C G T A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C

Hic1/MA0739.1/Jaspar

Match Rank:9
Score:0.58
Offset:5
Orientation:forward strand
Alignment:CATGTCTGCCAGC-
-----ATGCCAACC
 A G T C C T G A A G C T A C T G C G A T A T G C A C G T A T C G T A G C A T G C C G T A A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

POL010.1_DCE_S_III/Jaspar

Match Rank:10
Score:0.58
Offset:9
Orientation:forward strand
Alignment:CATGTCTGCCAGC-
---------CAGCC
 A G T C C T G A A G C T A C T G C G A T A T G C A C G T A T C G T A G C A T G C C G T A A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C