Information for 19-CACCCHCAGGTGAGCA (Motif 35)

A G T C C T G A G T A C T A G C A G T C G T A C T A G C G T C A T C A G A T C G C G A T A C T G C G T A C T A G T A G C C G T A
Reverse Opposite:
A C G T A C T G A G T C C G A T T A G C C G T A A T G C A G T C A C G T A C T G C A T G C T A G A T C G C A T G A G C T A C T G
p-value:1e-6
log p-value:-1.542e+01
Information Content per bp:1.699
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.33%
Number of Background Sequences with motif24.1
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets46.6 +/- 24.3bp
Average Position of motif in Background55.7 +/- 33.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZEB1/MA0103.2/Jaspar

Match Rank:1
Score:0.61
Offset:6
Orientation:reverse strand
Alignment:CACCCHCAGGTGAGCA
------CAGGTGAGG-
 A G T C C T G A G T A C T A G C A G T C G T A C T A G C G T C A T C A G A T C G C G A T A C T G C G T A C T A G T A G C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A C T G A C G T C T A G G C T A C T A G A C T G A C G T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.55
Offset:6
Orientation:forward strand
Alignment:CACCCHCAGGTGAGCA-
------CAGGTAAGTAT
 A G T C C T G A G T A C T A G C A G T C G T A C T A G C G T C A T C A G A T C G C G A T A C T G C G T A C T A G T A G C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T

RARA(var.2)/MA0730.1/Jaspar

Match Rank:3
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----CACCCHCAGGTGAGCA
AGGTCATGCAAAGGTCA---
 A C G T A C G T A C G T A C G T A G T C C T G A G T A C T A G C A G T C G T A C T A G C G T C A T C A G A T C G C G A T A C T G C G T A C T A G T A G C C G T A
T C G A A C T G A C T G A C G T G A T C T G C A G A C T A T C G A G T C C G T A T C G A T C G A C A T G A C T G A C G T A T G C C T G A A C G T A C G T A C G T

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:4
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CACCCHCAGGTGAGCA--
-ATCCACAGGTGCGAAAA
 A G T C C T G A G T A C T A G C A G T C G T A C T A G C G T C A T C A G A T C G C G A T A C T G C G T A C T A G T A G C C G T A A C G T A C G T
A C G T T C G A A C G T G T A C G T A C T G C A G T A C G T C A A T C G T A C G A G C T A C T G A G T C C T A G T C G A C G T A G T C A C G T A

Rarb(var.2)/MA0858.1/Jaspar

Match Rank:5
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----CACCCHCAGGTGAGCA
AGGTCAACTAAAGGTCA---
 A C G T A C G T A C G T A C G T A G T C C T G A G T A C T A G C A G T C G T A C T A G C G T C A T C A G A T C G C G A T A C T G C G T A C T A G T A G C C G T A
T C G A A T C G C A T G A G C T A T G C C T G A G T C A T G A C A G C T C G T A C T G A C T G A T A C G A C T G A C G T A G T C C T G A A C G T A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:6
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----CACCCHCAGGTGAGCA
RGGTCADNNAGAGGTCAV--
 A C G T A C G T A C G T A C G T A G T C C T G A G T A C T A G C A G T C G T A C T A G C G T C A T C A G A T C G C G A T A C T G C G T A C T A G T A G C C G T A
C T G A C A T G A C T G A C G T A T G C C G T A C A T G T A C G A T G C G C T A T A C G C T G A C T A G A C T G A C G T A T G C C G T A T A G C A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.53
Offset:4
Orientation:forward strand
Alignment:CACCCHCAGGTGAGCA
----CAAAGGTCAG--
 A G T C C T G A G T A C T A G C A G T C G T A C T A G C G T C A T C A G A T C G C G A T A C T G C G T A C T A G T A G C C G T A
A C G T A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:CACCCHCAGGTGAGCA
--GCCTCAGGGCAT--
 A G T C C T G A G T A C T A G C A G T C G T A C T A G C G T C A T C A G A T C G C G A T A C T G C G T A C T A G T A G C C G T A
A C G T A C G T A T C G A G T C A G T C A G C T A T G C C T G A C T A G A C T G A T C G G T A C G C T A C G A T A C G T A C G T

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:9
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CACCCHCAGGTGAGCA
NTGCCCANNGGTNA---
 A C G T A G T C C T G A G T A C T A G C A G T C G T A C T A G C G T C A T C A G A T C G C G A T A C T G C G T A C T A G T A G C C G T A
T G A C G C A T T C A G G T A C G A T C A G T C C G T A T A C G T C G A C T A G T C A G G A C T C A T G C T G A A C G T A C G T A C G T

RARA::RXRA/MA0159.1/Jaspar

Match Rank:10
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----CACCCHCAGGTGAGCA
AGGTCACGGAGAGGTCA---
 A C G T A C G T A C G T A C G T A G T C C T G A G T A C T A G C A G T C G T A C T A G C G T C A T C A G A T C G C G A T A C T G C G T A C T A G T A G C C G T A
C T G A A C T G C A T G A C G T A T G C C T G A A G C T T A C G T C A G C T G A T A C G T C G A A C T G A C T G C A G T A T G C C G T A A C G T A C G T A C G T