Information for 1-RYRGKTYMRKGAC (Motif 3)

C T A G A G C T C T G A A C T G A C T G A C G T A G T C G T A C C T G A A C T G A C T G C G T A A G T C
Reverse Opposite:
A C T G A C G T A G T C G T A C G A C T A C T G C T A G C G T A G T A C A G T C G A C T C T G A G A T C
p-value:1e-12
log p-value:-2.899e+01
Information Content per bp:1.762
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif2.65%
Number of Background Sequences with motif50.5
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets49.0 +/- 23.3bp
Average Position of motif in Background45.6 +/- 24.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:1
Score:0.71
Offset:2
Orientation:forward strand
Alignment:RYRGKTYMRKGAC-
--AGGTCAAGGTCA
 C T A G A G C T C T G A A C T G A C T G A C G T A G T C G T A C C T G A A C T G A C T G C G T A A G T C A C G T
A C G T A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:2
Score:0.69
Offset:2
Orientation:forward strand
Alignment:RYRGKTYMRKGAC---
--AGGTCANTGACCTN
 C T A G A G C T C T G A A C T G A C T G A C G T A G T C G T A C C T G A A C T G A C T G C G T A A G T C A C G T A C G T A C G T
A C G T A C G T T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:3
Score:0.69
Offset:2
Orientation:forward strand
Alignment:RYRGKTYMRKGAC-
--AGGTCAAGGTCA
 C T A G A G C T C T G A A C T G A C T G A C G T A G T C G T A C C T G A A C T G A C T G C G T A A G T C A C G T
A C G T A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

Pax2/MA0067.1/Jaspar

Match Rank:4
Score:0.61
Offset:6
Orientation:reverse strand
Alignment:RYRGKTYMRKGAC-
------NCGTGACN
 C T A G A G C T C T G A A C T G A C T G A C G T A G T C G T A C C T G A A C T G A C T G C G T A A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:5
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:RYRGKTYMRKGAC--
---GGTTAGAGACCT
 C T A G A G C T C T G A A C T G A C T G A C G T A G T C G T A C C T G A A C T G A C T G C G T A A G T C A C G T A C G T
A C G T A C G T A C G T C T A G T A C G C G A T A C G T C G T A T C A G C T G A T C A G G T C A T G A C A G T C G A C T

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:6
Score:0.58
Offset:7
Orientation:forward strand
Alignment:RYRGKTYMRKGAC
-------CATGAC
 C T A G A G C T C T G A A C T G A C T G A C G T A G T C G T A C C T G A A C T G A C T G C G T A A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C T C G A A C G T C A T G C G T A A G T C

Nr5a2/MA0505.1/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:forward strand
Alignment:RYRGKTYMRKGAC---
-AAGTTCAAGGTCAGC
 C T A G A G C T C T G A A C T G A C T G A C G T A G T C G T A C C T G A A C T G A C T G C G T A A G T C A C G T A C G T A C G T
A C G T T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C

PH0073.1_Hoxc9/Jaspar

Match Rank:8
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:RYRGKTYMRKGAC----
-NNAATTAATGACCNNN
 C T A G A G C T C T G A A C T G A C T G A C G T A G T C G T A C C T G A A C T G A C T G C G T A A G T C A C G T A C G T A C G T A C G T
A C G T T G C A G C A T C T G A C T G A C G A T A C G T C G T A C G T A A G C T A C T G C T G A A G T C G A T C A G C T G T A C A G T C

PH0047.1_Hoxa11/Jaspar

Match Rank:9
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:RYRGKTYMRKGAC----
-NNGTTTTACGACTTTA
 C T A G A G C T C T G A A C T G A C T G A C G T A G T C G T A C C T G A A C T G A C T G C G T A A G T C A C G T A C G T A C G T A C G T
A C G T G T C A G A C T C T A G C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C G A C T C G A T G A C T C G T A

PH0065.1_Hoxc10/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:RYRGKTYMRKGAC----
-ANNTTTTACGACNTNN
 C T A G A G C T C T G A A C T G A C T G A C G T A G T C G T A C C T G A A C T G A C T G C G T A A G T C A C G T A C G T A C G T A C G T
A C G T T G C A T A G C C T A G G C A T C A G T C G A T C G A T C G T A A G T C A C T G C T G A A G T C G A C T G C A T G C A T C G T A