Information for 1-RAMCMAKCYMWTGCYT (Motif 1)

C T G A C G T A G T C A A G T C G T A C C G T A A C T G A G T C G A T C G T A C C G A T A C G T A C T G A G T C A G C T A C G T
Reverse Opposite:
C G T A C T G A A C T G T A G C C G T A C G T A A C T G C T A G A C T G G T A C A C G T A C T G A C T G A C G T A C G T A G C T
p-value:1e-14
log p-value:-3.430e+01
Information Content per bp:1.809
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.33%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets56.0 +/- 18.8bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SCRT1/MA0743.1/Jaspar

Match Rank:1
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:RAMCMAKCYMWTGCYT
-ANCCACCTGTTGCNC
 C T G A C G T A G T C A A G T C G T A C C G T A A C T G A G T C G A T C G T A C C G A T A C G T A C T G A G T C A G C T A C G T
A C G T C T G A T C G A T G A C G T A C T C G A G T A C G A T C A C G T A C T G A C G T C A G T C T A G T G A C C G A T A G T C

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:RAMCMAKCYMWTGCYT-
------NNACTTGCCTT
 C T G A C G T A G T C A A G T C G T A C C G T A A C T G A G T C G A T C G T A C C G A T A C G T A C T G A G T C A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T

SCRT2/MA0744.1/Jaspar

Match Rank:3
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:RAMCMAKCYMWTGCYT
---CCACCTGTTGCAT
 C T G A C G T A G T C A A G T C G T A C C G T A A C T G A G T C G A T C G T A C C G A T A C G T A C T G A G T C A G C T A C G T
A C G T A C G T A C G T T A G C G T A C C G T A A T G C A G T C A C G T C A T G A C G T A C G T A C T G T G A C C G T A A G C T

PB0098.1_Zfp410_1/Jaspar

Match Rank:4
Score:0.49
Offset:-1
Orientation:reverse strand
Alignment:-RAMCMAKCYMWTGCYT
NNNTCCATCCCATAANN
 A C G T C T G A C G T A G T C A A G T C G T A C C G T A A C T G A G T C G A T C G T A C C G A T A C G T A C T G A G T C A G C T A C G T
A C G T G C A T G T C A A C G T T G A C G A T C G C T A A G C T G A T C G A T C G A T C C G T A C A G T G C T A G T C A A G C T G C T A

ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer

Match Rank:5
Score:0.49
Offset:4
Orientation:reverse strand
Alignment:RAMCMAKCYMWTGCYT
----CAGCTGTTTCCT
 C T G A C G T A G T C A A G T C G T A C C G T A A C T G A G T C G A T C G T A C C G A T A C G T A C T G A G T C A G C T A C G T
A C G T A C G T A C G T A C G T G T A C C G T A C A T G T A G C A G C T A C T G A G C T G C A T A C G T A G T C A G T C A G C T

Sox5/MA0087.1/Jaspar

Match Rank:6
Score:0.49
Offset:0
Orientation:reverse strand
Alignment:RAMCMAKCYMWTGCYT
NAACAAT---------
 C T G A C G T A G T C A A G T C G T A C C G T A A C T G A G T C G A T C G T A C C G A T A C G T A C T G A G T C A G C T A C G T
G C A T C G T A C T G A A G T C C G T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer

Match Rank:7
Score:0.48
Offset:-1
Orientation:forward strand
Alignment:-RAMCMAKCYMWTGCYT---
NRRRCAWGTCCDGRCATGYY
 A C G T C T G A C G T A G T C A A G T C G T A C C G T A A C T G A G T C G A T C G T A C C G A T A C G T A C T G A G T C A G C T A C G T A C G T A C G T A C G T
C G T A C T G A C T A G C T G A A G T C G C T A C G A T A T C G G A C T G A T C A G T C C T G A C T A G C T A G A G T C G C T A C G A T C T A G G A T C G A T C

p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer

Match Rank:8
Score:0.48
Offset:-1
Orientation:forward strand
Alignment:-RAMCMAKCYMWTGCYT---
NNNGCATGTCNNGACATGCN
 A C G T C T G A C G T A G T C A A G T C G T A C C G T A A C T G A G T C G A T C G T A C C G A T A C G T A C T G A G T C A G C T A C G T A C G T A C G T A C G T
G T C A T C G A C T A G C T A G A G T C G T C A C G A T C T A G G A C T G A T C G A T C T C A G C T A G C T G A A G T C G C T A C A G T T C A G G A T C G A T C

SRY/MA0084.1/Jaspar

Match Rank:9
Score:0.47
Offset:-2
Orientation:forward strand
Alignment:--RAMCMAKCYMWTGCYT
GTAAACAAT---------
 A C G T A C G T C T G A C G T A G T C A A G T C G T A C C G T A A C T G A G T C G A T C G T A C C G A T A C G T A C T G A G T C A G C T A C G T
A C T G C G A T C G T A C G T A C G T A A G T C C G T A C T G A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.47
Offset:2
Orientation:forward strand
Alignment:RAMCMAKCYMWTGCYT
--ACATGCCCGGGCAT
 C T G A C G T A G T C A A G T C G T A C C G T A A C T G A G T C G A T C G T A C C G A T A C G T A C T G A G T C A G C T A C G T
A C G T A C G T C T G A T A G C G C T A C G A T A T C G A G T C G A T C G A T C C T A G T C A G T C A G G T A C G C T A C A G T