Information for 13-TACACTTGAATTCAAA (Motif 39)

A C G T C G T A G T A C T G C A A G T C A C G T A C G T A C T G C G T A C G T A A C G T A C G T A G T C C G T A C G T A C T G A
Reverse Opposite:
A G C T A C G T A C G T A C T G C G T A C G T A A C G T A C G T A G T C C G T A C G T A C T A G A C G T A C T G C G A T C G T A
p-value:1e-1
log p-value:-4.404e+00
Information Content per bp:1.930
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif0.27%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets65.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.63
Offset:8
Orientation:reverse strand
Alignment:TACACTTGAATTCAAA-
--------NATTCAAAT
 A C G T C G T A G T A C T G C A A G T C A C G T A C G T A C T G C G T A C G T A A C G T A C G T A G T C C G T A C G T A C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T

PH0114.1_Nkx2-5/Jaspar

Match Rank:2
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---TACACTTGAATTCAAA
TAAGCCACTTGAATTT---
 A C G T A C G T A C G T A C G T C G T A G T A C T G C A A G T C A C G T A C G T A C T G C G T A C G T A A C G T A C G T A G T C C G T A C G T A C T G A
G A C T C T G A C T G A C A T G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T C G A G C A T G A C T A G C T A C G T A C G T A C G T

NKX2-8/MA0673.1/Jaspar

Match Rank:3
Score:0.60
Offset:1
Orientation:forward strand
Alignment:TACACTTGAATTCAAA
-CCACTTGAA------
 A C G T C G T A G T A C T G C A A G T C A C G T A C G T A C T G C G T A C G T A A C G T A C G T A G T C C G T A C G T A C T G A
A C G T T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

PB0171.1_Sox18_2/Jaspar

Match Rank:4
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:TACACTTGAATTCAAA--
--NNNNTGAATTCANNNC
 A C G T C G T A G T A C T G C A A G T C A C G T A C G T A C T G C G T A C G T A A C G T A C G T A G T C C G T A C G T A C T G A A C G T A C G T
A C G T A C G T A C T G C A T G G A T C G C T A A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A T A C G A G C T T G A C G A T C

PB0068.1_Sox1_1/Jaspar

Match Rank:5
Score:0.58
Offset:4
Orientation:forward strand
Alignment:TACACTTGAATTCAAA----
----AATCAATTCAATAATT
 A C G T C G T A G T A C T G C A A G T C A C G T A C G T A C T G C G T A C G T A A C G T A C G T A G T C C G T A C G T A C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T C G T A C A G T G A T C G C T A G C T A G C A T C G A T T A G C G C T A G C T A G C A T C G T A G T C A C G A T A C G T

PH0171.1_Nkx2-1/Jaspar

Match Rank:6
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---TACACTTGAATTCAAA
TAAGCCACTTGAAATT---
 A C G T A C G T A C G T A C G T C G T A G T A C T G C A A G T C A C G T A C G T A C T G C G T A C G T A A C G T A C G T A G T C C G T A C G T A C T G A
A G C T T C G A C T G A A T C G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G T C A G C A T G C A T A C G T A C G T A C G T

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:7
Score:0.57
Offset:2
Orientation:forward strand
Alignment:TACACTTGAATTCAAA-
--CCATTGTATGCAAAT
 A C G T C G T A G T A C T G C A A G T C A C G T A C G T A C T G C G T A C G T A A C G T A C G T A G T C C G T A C G T A C T G A A C G T
A C G T A C G T A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T

PH0113.1_Nkx2-4/Jaspar

Match Rank:8
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---TACACTTGAATTCAAA
TAAGCCACTTGAAATT---
 A C G T A C G T A C G T A C G T C G T A G T A C T G C A A G T C A C G T A C G T A C T G C G T A C G T A A C G T A C G T A G T C C G T A C G T A C T G A
G C A T C G T A C G T A C T A G T A G C G A T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G C T A G C A T G A C T A C G T A C G T A C G T

PH0111.1_Nkx2-2/Jaspar

Match Rank:9
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---TACACTTGAATTCAAA
ATAACCACTTGAAAATT--
 A C G T A C G T A C G T A C G T C G T A G T A C T G C A A G T C A C G T A C G T A C T G C G T A C G T A A C G T A C G T A G T C C G T A C G T A C T G A
G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T A C G T A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:TACACTTGAATTCAAA
ACCACTTGAA------
 A C G T C G T A G T A C T G C A A G T C A C G T A C G T A C T G C G T A C G T A A C G T A C G T A G T C C G T A C G T A C T G A
T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T