Information for 5-AAGAATRKCWGGS (Motif 8)

C T G A C G T A A T C G C G T A C G T A A C G T C T A G A C G T A T G C C G T A A C T G A C T G A T G C
Reverse Opposite:
A T C G A G T C A G T C C G A T A T C G G T C A A G T C C G T A A C G T A C G T A T G C A C G T A G C T
p-value:1e-12
log p-value:-2.790e+01
Information Content per bp:1.871
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.86%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets58.3 +/- 19.4bp
Average Position of motif in Background67.0 +/- 11.8bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0183.1_Sry_2/Jaspar

Match Rank:1
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------AAGAATRKCWGGS
TCACGGAACAATAGGTG--
 A C G T A C G T A C G T A C G T A C G T A C G T C T G A C G T A A T C G C G T A C G T A A C G T C T A G A C G T A T G C C G T A A C T G A C T G A T G C
G A C T G A T C C G T A G T A C C A T G T C A G T G C A C G T A A G T C C T G A C G T A G C A T C T G A C T A G T C A G G A C T T A C G A C G T A C G T

Sox5/MA0087.1/Jaspar

Match Rank:2
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-AAGAATRKCWGGS
NAACAAT-------
 A C G T C T G A C G T A A T C G C G T A C G T A A C G T C T A G A C G T A T G C C G T A A C T G A C T G A T G C
G C A T C G T A C T G A A G T C C G T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AAGAATRKCWGGS
AAGGATATNTN--
 C T G A C G T A A T C G C G T A C G T A A C G T C T A G A C G T A T G C C G T A A C T G A C T G A T G C
T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:4
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AAGAATRKCWGGS
RAACAATGGN----
 A C G T C T G A C G T A A T C G C G T A C G T A A C G T C T A G A C G T A T G C C G T A A C T G A C T G A T G C
C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T A C G T A C G T A C G T

SOX9/MA0077.1/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-AAGAATRKCWGGS
GAACAATGG-----
 A C G T C T G A C G T A A T C G C G T A C G T A A C G T C T A G A C G T A T G C C G T A A C T G A C T G A T G C
C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T A C G T A C G T A C G T A C G T

TEAD4/MA0809.1/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-AAGAATRKCWGGS
NTGGAATGTN----
 A C G T C T G A C G T A A T C G C G T A C G T A A C G T C T A G A C G T A T G C C G T A A C T G A C T G A T G C
C T G A G C A T C T A G T C A G G C T A C G T A G C A T A C T G G A C T A C T G A C G T A C G T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:7
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--AAGAATRKCWGGS
VRAACAATGG-----
 A C G T A C G T C T G A C G T A A T C G C G T A C G T A A C G T C T A G A C G T A T G C C G T A A C T G A C T G A T G C
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T A C G T A C G T

MF0011.1_HMG_class/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AAGAATRKCWGGS
AACAAT-------
 C T G A C G T A A T C G C G T A C G T A A C G T C T A G A C G T A T G C C G T A A C T G A C T G A T G C
T C G A C G T A G A T C C T G A T G C A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SOX4/MA0867.1/Jaspar

Match Rank:9
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-AAGAATRKCWGGS--
GAACAATTGCAGTGTT
 A C G T C T G A C G T A A T C G C G T A C G T A A C G T C T A G A C G T A T G C C G T A A C T G A C T G A T G C A C G T A C G T
C T A G C G T A C T G A A G T C C T G A C T G A A C G T A C G T C A T G A G T C C T G A A C T G A C G T C T A G A G C T C G A T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-AAGAATRKCWGGS
GAACAATGGN----
 A C G T C T G A C G T A A T C G C G T A C G T A A C G T C T A G A C G T A T G C C G T A A C T G A C T G A T G C
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T A C G T A C G T