Information for 8-RASARAGGSWGMT (Motif 12)

C T G A C T G A A T G C C G T A C T A G C G T A A C T G A C T G A T G C G C T A A C T G T G C A A C G T
Reverse Opposite:
C G T A A C G T G T A C C G A T A T C G A G T C A G T C A C G T A G T C A C G T A T C G A G C T A G C T
p-value:1e-10
log p-value:-2.436e+01
Information Content per bp:1.807
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.87%
Number of Background Sequences with motif197.5
Percentage of Background Sequences with motif0.41%
Average Position of motif in Targets43.6 +/- 21.2bp
Average Position of motif in Background48.0 +/- 26.9bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2/MA0143.3/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:RASARAGGSWGMT
AACAAAGG-----
 C T G A C T G A A T G C C G T A C T A G C G T A A C T G A C T G A T G C G C T A A C T G T G C A A C G T
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:2
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--RASARAGGSWGMT
AAAACAAAGG-----
 A C G T A C G T C T G A C T G A A T G C C G T A C T A G C G T A A C T G A C T G A T G C G C T A A C T G T G C A A C G T
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:3
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:RASARAGGSWGMT
-ACAAAGGNBCCT
 C T G A C T G A A T G C C G T A C T A G C G T A A C T G A C T G A T G C G C T A A C T G T G C A A C G T
A C G T G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:4
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--RASARAGGSWGMT
GGAACAAAGR-----
 A C G T A C G T C T G A C T G A A T G C C G T A C T A G C G T A A C T G A C T G A T G C G C T A A C T G T G C A A C G T
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:5
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:RASARAGGSWGMT
RACAAWGG-----
 C T G A C T G A A T G C C G T A C T A G C G T A A C T G A C T G A T G C G C T A A C T G T G C A A C G T
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:6
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--RASARAGGSWGMT
VRRACAAWGG-----
 A C G T A C G T C T G A C T G A A T G C C G T A C T A G C G T A A C T G A C T G A T G C G C T A A C T G T G C A A C G T
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-RASARAGGSWGMT
GAACAATGGN----
 A C G T C T G A C T G A A T G C C G T A C T A G C G T A A C T G A C T G A T G C G C T A A C T G T G C A A C G T
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T A C G T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:8
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----RASARAGGSWGMT
ATAAGAACAAAGGACTA-
 A C G T A C G T A C G T A C G T A C G T C T G A C T G A A T G C C G T A C T A G C G T A A C T G A C T G A T G C G C T A A C T G T G C A A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:9
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----RASARAGGSWGMT
AGAAGAACAAAGGACTA-
 A C G T A C G T A C G T A C G T A C G T C T G A C T G A A T G C C G T A C T A G C G T A A C T G A C T G A T G C G C T A A C T G T G C A A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A A C G T

SOX10/MA0442.1/Jaspar

Match Rank:10
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:RASARAGGSWGMT
-ACAAAG------
 C T G A C T G A A T G C C G T A C T A G C G T A A C T G A C T G A T G C G C T A A C T G T G C A A C G T
A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T