Information for 14-CGTGCTTTAA (Motif 11)

A G T C C A T G A C G T A C T G A G T C A G C T C G A T C G A T C G T A C G T A
Reverse Opposite:
A C G T A C G T C G T A C G T A C T G A A C T G A G T C C G T A G T A C C T A G
p-value:1e-10
log p-value:-2.374e+01
Information Content per bp:1.873
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.31%
Number of Background Sequences with motif34.6
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets37.6 +/- 28.6bp
Average Position of motif in Background51.1 +/- 34.6bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:1
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CGTGCTTTAA
RTACGTGC-----
 A C G T A C G T A C G T A G T C C A T G A C G T A C T G A G T C A G C T C G A T C G A T C G T A C G T A
C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C A C G T A C G T A C G T A C G T A C G T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:2
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CGTGCTTTAA
GGACGTGC-----
 A C G T A C G T A C G T A G T C C A T G A C G T A C T G A G T C A G C T C G A T C G A T C G T A C G T A
T A C G A C T G T C G A A G T C A C T G A C G T A C T G T A G C A C G T A C G T A C G T A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CGTGCTTTAA
NNACTTGCCTT--
 A C G T A C G T A C G T A G T C C A T G A C G T A C T G A G T C A G C T C G A T C G A T C G T A C G T A
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:4
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CGTGCTTTAA
TACGTGCV----
 A C G T A C G T A G T C C A T G A C G T A C T G A G T C A G C T C G A T C G A T C G T A C G T A
A C G T C T G A G A T C A T C G G A C T T C A G G T A C T A G C A C G T A C G T A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:5
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CGTGCTTTAA
TTGCGTGCVA---
 A C G T A C G T A C G T A G T C C A T G A C G T A C T G A G T C A G C T C G A T C G A T C G T A C G T A
A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A A C G T A C G T A C G T

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:6
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----CGTGCTTTAA
GGGTACGTGC-----
 A C G T A C G T A C G T A C G T A C G T A G T C C A T G A C G T A C T G A G T C A G C T C G A T C G A T C G T A C G T A
C T A G A T C G T C A G C A G T C T G A A T G C A C T G A G C T A C T G G T A C A C G T A C G T A C G T A C G T A C G T

Hes1/MA1099.1/Jaspar

Match Rank:7
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----CGTGCTTTAA
NNCGCGTGNN----
 A C G T A C G T A C G T A C G T A G T C C A T G A C G T A C T G A G T C A G C T C G A T C G A T C G T A C G T A
C A T G C T G A T G A C C T A G A G T C T C A G G A C T C T A G A T G C A T G C A C G T A C G T A C G T A C G T

Arid3a/MA0151.1/Jaspar

Match Rank:8
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:CGTGCTTTAA-
-----TTTAAT
 A G T C C A T G A C G T A C T G A G T C A G C T C G A T C G A T C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T G C A T A C G T A C G T C T G A C G T A A C G T

PH0116.1_Nkx2-9/Jaspar

Match Rank:9
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----CGTGCTTTAA--
TTTTAAGTACTTAAATT
 A C G T A C G T A C G T A C G T A C G T A G T C C A T G A C G T A C T G A G T C A G C T C G A T C G A T C G T A C G T A A C G T A C G T
C G A T G A C T G C A T C G A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C G T A G C T A C G A T G A C T

Pax6/MA0069.1/Jaspar

Match Rank:10
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----CGTGCTTTAA
AANTCATGCGTGAA
 A C G T A C G T A C G T A C G T A G T C C A T G A C G T A C T G A G T C A G C T C G A T C G A T C G T A C G T A
G T C A T C G A A G T C G A C T A T G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A T C G A