Information for 15-AGGGTCATGCATG (Motif 32)

C T G A C A T G C A T G A T C G G C A T A G T C G T C A A C G T C A T G T G A C T G C A A C G T C T A G
Reverse Opposite:
G A T C G T C A A C G T A C T G G A T C T G C A C A G T T C A G C G T A A T G C G T A C G T A C G A C T
p-value:1e-6
log p-value:-1.558e+01
Information Content per bp:1.536
Number of Target Sequences with motif68.0
Percentage of Target Sequences with motif10.83%
Number of Background Sequences with motif2594.4
Percentage of Background Sequences with motif5.55%
Average Position of motif in Targets51.6 +/- 25.7bp
Average Position of motif in Background51.3 +/- 27.8bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX1/MA0779.1/Jaspar

Match Rank:1
Score:0.65
Offset:2
Orientation:forward strand
Alignment:AGGGTCATGCATG------
--CGTCACGCATGACTGCA
 C T G A C A T G C A T G A T C G G C A T A G T C G T C A A C G T C A T G T G A C T G C A A C G T C T A G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A T G C C A T G G C A T G A T C T G C A G A T C C A T G A T G C G C T A G A C T A T C G T C G A T A G C G A C T C A T G T G A C G T C A

PAX9/MA0781.1/Jaspar

Match Rank:2
Score:0.63
Offset:2
Orientation:forward strand
Alignment:AGGGTCATGCATG------
--CGTCACGCATGACTGCA
 C T G A C A T G C A T G A T C G G C A T A G T C G T C A A C G T C A T G T G A C T G C A A C G T C T A G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A T G C A C T G G C A T A G T C T G C A A G T C A C T G A T G C G C T A G A C T A T C G C T G A T A G C G A C T C A T G T G A C G T C A

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:AGGGTCATGCATG-----
--NGTCACGCTTGGCTGC
 C T G A C A T G C A T G A T C G G C A T A G T C G T C A A C G T C A T G T G A C T G C A A C G T C T A G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:4
Score:0.61
Offset:3
Orientation:forward strand
Alignment:AGGGTCATGCATG-----
---GTCATGCHTGRCTGS
 C T G A C A T G C A T G A T C G G C A T A G T C G T C A A C G T C A T G T G A C T G C A A C G T C T A G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

PB0178.1_Sox8_2/Jaspar

Match Rank:5
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:AGGGTCATGCATG-
NNTNTCATGAATGT
 C T G A C A T G C A T G A T C G G C A T A G T C G T C A A C G T C A T G T G A C T G C A A C G T C T A G A C G T
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:6
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AGGGTCATGCATG
-AGGTCA------
 C T G A C A T G C A T G A T C G G C A T A G T C G T C A A C G T C A T G T G A C T G C A A C G T C T A G
A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:7
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:AGGGTCATGCATG
---GTCATN----
 C T G A C A T G C A T G A T C G G C A T A G T C G T C A A C G T C A T G T G A C T G C A A C G T C T A G
A C G T A C G T A C G T T C A G A C G T G A T C C G T A A G C T A T C G A C G T A C G T A C G T A C G T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:8
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----AGGGTCATGCATG
CGCGCCGGGTCACGTA--
 A C G T A C G T A C G T A C G T A C G T C T G A C A T G C A T G A T C G G C A T A G T C G T C A A C G T C A T G T G A C T G C A A C G T C T A G
T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:9
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AGGGTCATGCATG
AGRGGTCA------
 A C G T C T G A C A T G C A T G A T C G G C A T A G T C G T C A A C G T C A T G T G A C T G C A A C G T C T A G
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

PB0057.1_Rxra_1/Jaspar

Match Rank:10
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----AGGGTCATGCATG
NTNNNGGGGTCANGNNN-
 A C G T A C G T A C G T A C G T A C G T C T G A C A T G C A T G A T C G G C A T A G T C G T C A A C G T C A T G T G A C T G C A A C G T C T A G
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A A C G T