Information for 6-TTHATTTAAGGAC (Motif 13)

A C G T C G A T G A C T G T C A A C G T A C G T A C G T C G T A C G T A A C T G A C T G T C G A A T G C
Reverse Opposite:
A T C G A G C T A G T C G T A C A C G T A C G T C G T A C G T A C G T A A C G T C G T A C G T A C G T A
p-value:1e-10
log p-value:-2.419e+01
Information Content per bp:1.845
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.96%
Number of Background Sequences with motif4.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets34.2 +/- 26.4bp
Average Position of motif in Background57.3 +/- 9.5bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC10/MA0905.1/Jaspar

Match Rank:1
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:TTHATTTAAGGAC
---NTTTTACGAC
 A C G T C G A T G A C T G T C A A C G T A C G T A C G T C G T A C G T A A C T G A C T G T C G A A T G C
A C G T A C G T A C G T C G T A C G A T G C A T G C A T C G A T C G T A G A T C C A T G C T G A A G T C

PH0056.1_Hoxa9/Jaspar

Match Rank:2
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TTHATTTAAGGAC---
ANTAATTTTATGGCCGN
 A C G T A C G T C G A T G A C T G T C A A C G T A C G T A C G T C G T A C G T A A C T G A C T G T C G A A T G C A C G T A C G T A C G T
G C T A G A C T G C A T G C T A C G T A G C A T C G A T C G A T C G A T C G T A G A C T C A T G C T A G T A G C G A T C A C T G G A C T

Hoxa11/MA0911.1/Jaspar

Match Rank:3
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:TTHATTTAAGGAC-
--ANTTTTACGACC
 A C G T C G A T G A C T G T C A A C G T A C G T A C G T C G T A C G T A A C T G A C T G T C G A A T G C A C G T
A C G T A C G T G C T A C G T A C G A T C G A T G C A T G C A T G C T A G A T C C T A G T C G A A G T C G A T C

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:4
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:TTHATTTAAGGAC
-TGATTTATGGCC
 A C G T C G A T G A C T G T C A A C G T A C G T A C G T C G T A C G T A A C T G A C T G T C G A A T G C
A C G T C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

PH0073.1_Hoxc9/Jaspar

Match Rank:5
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:TTHATTTAAGGAC----
-NNAATTAATGACCNNN
 A C G T C G A T G A C T G T C A A C G T A C G T A C G T C G T A C G T A A C T G A C T G T C G A A T G C A C G T A C G T A C G T A C G T
A C G T T G C A G C A T C T G A C T G A C G A T A C G T C G T A C G T A A G C T A C T G C T G A A G T C G A T C A G C T G T A C A G T C

HOXC11/MA0651.1/Jaspar

Match Rank:6
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:TTHATTTAAGGAC-
---NTTTTACGACC
 A C G T C G A T G A C T G T C A A C G T A C G T A C G T C G T A C G T A A C T G A C T G T C G A A T G C A C G T
A C G T A C G T A C G T C G T A C G A T C A G T C G A T G C A T C G T A A G T C C T A G C T G A A G T C G A T C

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:7
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TTHATTTAAGGAC
-DGWTTTATGRCN
 A C G T C G A T G A C T G T C A A C G T A C G T A C G T C G T A C G T A A C T G A C T G T C G A A T G C
A C G T C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:8
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:TTHATTTAAGGAC-
----TTTAATTGCN
 A C G T C G A T G A C T G T C A A C G T A C G T A C G T C G T A C G T A A C T G A C T G T C G A A T G C A C G T
A C G T A C G T A C G T A C G T C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C

Hoxc9/MA0485.1/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TTHATTTAAGGAC
NTGATTTATGGCC
 A C G T C G A T G A C T G T C A A C G T A C G T A C G T C G T A C G T A A C T G A C T G T C G A A T G C
T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

HOXD11/MA0908.1/Jaspar

Match Rank:10
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:TTHATTTAAGGAC
---NTTTTACGAC
 A C G T C G A T G A C T G T C A A C G T A C G T A C G T C G T A C G T A A C T G A C T G T C G A A T G C
A C G T A C G T A C G T C G A T C G A T C G A T C G A T C G A T C G T A A G T C C T A G C G T A A G T C