Information for 1-DDTVAGGTCACTTTCC (Motif 1)

C A G T C A T G A G C T T A C G C T G A A C T G A C T G A G C T A G T C C G T A A T G C A G C T A G C T C G A T A G T C A G T C
Reverse Opposite:
A C T G A C T G C G T A C T G A C T G A A T C G A C G T A C T G C T G A A G T C A G T C A G C T A G T C C T G A G A T C G A C T
p-value:1e-14
log p-value:-3.247e+01
Information Content per bp:1.784
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.96%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets35.7 +/- 21.3bp
Average Position of motif in Background39.3 +/- 21.1bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:1
Score:0.73
Offset:2
Orientation:forward strand
Alignment:DDTVAGGTCACTTTCC
--TRAGGTCA------
 C A G T C A T G A G C T T A C G C T G A A C T G A C T G A G C T A G T C C G T A A T G C A G C T A G C T C G A T A G T C A G T C
A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:2
Score:0.71
Offset:3
Orientation:forward strand
Alignment:DDTVAGGTCACTTTCC
---AAGGTCAC-----
 C A G T C A T G A G C T T A C G C T G A A C T G A C T G A G C T A G T C C G T A A T G C A G C T A G C T C G A T A G T C A G T C
A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T A C G T

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:3
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:DDTVAGGTCACTTTCC-
---NAGGTCANTGACCT
 C A G T C A T G A G C T T A C G C T G A A C T G A C T G A G C T A G T C C G T A A T G C A G C T A G C T C G A T A G T C A G T C A C G T
A C G T A C G T A C G T T C A G T C G A C T A G C A T G A C G T A T G C T C G A G A C T A G C T T A C G T G C A G T A C G T A C A G C T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.66
Offset:4
Orientation:forward strand
Alignment:DDTVAGGTCACTTTCC
----AGGTCA------
 C A G T C A T G A G C T T A C G C T G A A C T G A C T G A G C T A G T C C G T A A T G C A G C T A G C T C G A T A G T C A G T C
A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:DDTVAGGTCACTTTCC
ATCAAGGTCA------
 C A G T C A T G A G C T T A C G C T G A A C T G A C T G A G C T A G T C C G T A A T G C A G C T A G C T C G A T A G T C A G T C
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:6
Score:0.63
Offset:2
Orientation:forward strand
Alignment:DDTVAGGTCACTTTCC
--AGRGGTCA------
 C A G T C A T G A G C T T A C G C T G A A C T G A C T G A G C T A G T C C G T A A T G C A G C T A G C T C G A T A G T C A G T C
A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:DDTVAGGTCACTTTCC
-TCAAGGTCAN-----
 C A G T C A T G A G C T T A C G C T G A A C T G A C T G A G C T A G T C C G T A A T G C A G C T A G C T C G A T A G T C A G T C
A C G T A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T A C G T A C G T A C G T A C G T

Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer

Match Rank:8
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-DDTVAGGTCACTTTCC
NGRTGACGTCAY-----
 A C G T C A G T C A T G A G C T T A C G C T G A A C T G A C T G A G C T A G T C C G T A A T G C A G C T A G C T C G A T A G T C A G T C
T A G C C T A G T C G A G A C T A C T G C T G A A G T C T C A G G C A T T G A C C T G A A G C T A C G T A C G T A C G T A C G T A C G T

Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-DDTVAGGTCACTTTCC
NRRTGACGTCAT-----
 A C G T C A G T C A T G A G C T T A C G C T G A A C T G A C T G A G C T A G T C C G T A A T G C A G C T A G C T C G A T A G T C A G T C
A T G C T C A G T C G A G C A T A C T G C G T A A G T C T C A G G A C T T G A C C G T A A G C T A C G T A C G T A C G T A C G T A C G T

CREB1/MA0018.2/Jaspar

Match Rank:10
Score:0.59
Offset:2
Orientation:forward strand
Alignment:DDTVAGGTCACTTTCC
--TGACGTCA------
 C A G T C A T G A G C T T A C G C T G A A C T G A C T G A G C T A G T C C G T A A T G C A G C T A G C T C G A T A G T C A G T C
A C G T A C G T A C G T A T C G C G T A A T G C C T A G A G C T G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T