Information for 9-AATACGATTTTAT (Motif 9)

G T C A G T C A C G A T C G T A G A T C T C A G C G T A C A G T A G C T C A G T A G C T G C T A A G C T
Reverse Opposite:
C T G A C A G T C T G A G C T A C T G A G C T A C G A T A G T C C T A G G C A T G C T A A C G T A C G T
p-value:1e-8
log p-value:-2.051e+01
Information Content per bp:1.674
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif7.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets64.3 +/- 20.1bp
Average Position of motif in Background60.7 +/- 12.1bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0044.1_Homez/Jaspar

Match Rank:1
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----AATACGATTTTAT
NNTAAAAACGATGTTNT
 A C G T A C G T A C G T A C G T G T C A G T C A C G A T C G T A G A T C T C A G C G T A C A G T A G C T C A G T A G C T G C T A A G C T
G A T C G A C T C G A T T C G A C G T A C G T A G C T A G C T A A G T C C A T G C G T A C G A T A C T G C G A T C G A T C G A T G C A T

PH0078.1_Hoxd13/Jaspar

Match Rank:2
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:AATACGATTTTAT------
---NNANTTTTATTGGNNN
 G T C A G T C A C G A T C G T A G A T C T C A G C G T A C A G T A G C T C A G T A G C T G C T A A G C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer

Match Rank:3
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AATACGATTTTAT
NTAATBNAATTA---
 A C G T A C G T G T C A G T C A C G A T C G T A G A T C T C A G C G T A C A G T A G C T C A G T A G C T G C T A A G C T
G T A C G C A T C T G A C G T A G A C T A G C T C A T G T G C A C T G A A C G T G A C T C G T A A C G T A C G T A C G T

PH0075.1_Hoxd10/Jaspar

Match Rank:4
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:AATACGATTTTAT------
--NTNAATTTTATTGNATT
 G T C A G T C A C G A T C G T A G A T C T C A G C G T A C A G T A G C T C A G T A G C T G C T A A G C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G T A G C A T G C T A G C T A C T G A A G C T C G A T C G A T C G A T C T G A G C A T C A G T C T A G A G T C T G C A G A C T A C G T

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:5
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--AATACGATTTTAT
YTAATYNRATTA---
 A C G T A C G T G T C A G T C A C G A T C G T A G A T C T C A G C G T A C A G T A G C T C A G T A G C T G C T A A G C T
G A T C G C A T C T G A C G T A A G C T A G C T C G T A T C G A C T G A A C G T G C A T C G T A A C G T A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:6
Score:0.62
Offset:6
Orientation:reverse strand
Alignment:AATACGATTTTAT---
------NTTTTATTGG
 G T C A G T C A C G A T C G T A G A T C T C A G C G T A C A G T A G C T C A G T A G C T G C T A A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:7
Score:0.62
Offset:7
Orientation:reverse strand
Alignment:AATACGATTTTAT----
-------TTTTATTRGN
 G T C A G T C A C G A T C G T A G A T C T C A G C G T A C A G T A G C T C A G T A G C T G C T A A G C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:8
Score:0.62
Offset:6
Orientation:reverse strand
Alignment:AATACGATTTTAT---
------NTTTTATGAC
 G T C A G T C A C G A T C G T A G A T C T C A G C G T A C A G T A G C T C A G T A G C T G C T A A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C

PH0056.1_Hoxa9/Jaspar

Match Rank:9
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:AATACGATTTTAT------
--ANTAATTTTATGGCCGN
 G T C A G T C A C G A T C G T A G A T C T C A G C G T A C A G T A G C T C A G T A G C T G C T A A G C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C T A G A C T G C A T G C T A C G T A G C A T C G A T C G A T C G A T C G T A G A C T C A T G C T A G T A G C G A T C A C T G G A C T

PHOX2A/MA0713.1/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AATACGATTTTAT
TAATTTAATTA---
 A C G T G T C A G T C A C G A T C G T A G A T C T C A G C G T A C A G T A G C T C A G T A G C T G C T A A G C T
G C A T C T G A C T G A G A C T A G C T G A C T T C G A T C G A A G C T G C A T C G T A A C G T A C G T A C G T