Information for 12-CGATTCGAAT (Motif 14)

A T G C T A C G C G T A C A G T C A G T A G T C C A T G C T G A G T C A G C A T
Reverse Opposite:
C G T A C A G T G A C T G T A C T C A G G T C A G T C A G C A T A T G C T A C G
p-value:1e-1
log p-value:-4.105e+00
Information Content per bp:1.623
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif0.13%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets45.0 +/- 0.0bp
Average Position of motif in Background54.3 +/- 2.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CGATTCGAAT
-NATTCAAAT
 A T G C T A C G C G T A C A G T C A G T A G T C C A T G C T G A G T C A G C A T
A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T

PB0034.1_Irf4_1/Jaspar

Match Rank:2
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CGATTCGAAT--
TNTGGTTTCGATACN
 A C G T A C G T A C G T A T G C T A C G C G T A C A G T C A G T A G T C C A T G C T G A G T C A G C A T A C G T A C G T
G C A T A C G T G A C T C T A G A T C G C G A T C G A T A C G T A G T C C T A G C T G A G C A T G C T A G A T C A C T G

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CGATTCGAAT---
-WATGCAAATGAG
 A T G C T A C G C G T A C A G T C A G T A G T C C A T G C T G A G T C A G C A T A C G T A C G T A C G T
A C G T G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G

PB0035.1_Irf5_1/Jaspar

Match Rank:4
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CGATTCGAAT---
NTGGTTTCGGTTNNN
 A C G T A C G T A T G C T A C G C G T A C A G T C A G T A G T C C A T G C T G A G T C A G C A T A C G T A C G T A C G T
A G C T G A C T C T A G A C T G A C G T G C A T A G C T A G T C C T A G C T A G G A C T G C A T G A C T G C T A C G A T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:5
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CGATTCGAAT
CGGTTTCAAA-
 A C G T A T G C T A C G C G T A C A G T C A G T A G T C C A T G C T G A G T C A G C A T
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:6
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CGATTCGAAT---
-TATGCWAATBAV
 A T G C T A C G C G T A C A G T C A G T A G T C C A T G C T G A G T C A G C A T A C G T A C G T A C G T
A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

POU5F1B/MA0792.1/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CGATTCGAAT
-TATGCAAAT
 A T G C T A C G C G T A C A G T C A G T A G T C C A T G C T G A G T C A G C A T
A C G T G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T

Pou2f3/MA0627.1/Jaspar

Match Rank:8
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CGATTCGAAT----
TTGTATGCAAATTAGA
 A C G T A C G T A T G C T A C G C G T A C A G T C A G T A G T C C A T G C T G A G T C A G C A T A C G T A C G T A C G T A C G T
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

PH0145.1_Pou2f3/Jaspar

Match Rank:9
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CGATTCGAAT----
TTGTATGCAAATTAGA
 A C G T A C G T A T G C T A C G C G T A C A G T C A G T A G T C C A T G C T G A G T C A G C A T A C G T A C G T A C G T A C G T
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

PB0037.1_Isgf3g_1/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CGATTCGAAT---
TNAGTTTCGATTTTN
 A C G T A C G T A T G C T A C G C G T A C A G T C A G T A G T C C A T G C T G A G T C A G C A T A C G T A C G T A C G T
C A G T G C A T C T G A A T C G C G A T G C A T A C G T A G T C C T A G C G T A C G A T G C A T G A C T G A C T A C T G