Information for 4-AGCACCTTGGACA (Motif 3)

C G T A C T A G T A G C C G T A A G T C A G T C G A C T A C G T A C T G T A C G G T C A A T G C C G T A
Reverse Opposite:
A C G T T A C G A C G T A G T C A G T C T G C A C T G A C T A G A C T G A C G T A C T G A G T C A C G T
p-value:1e-15
log p-value:-3.485e+01
Information Content per bp:1.796
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.30%
Number of Background Sequences with motif12.2
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets48.4 +/- 22.5bp
Average Position of motif in Background62.9 +/- 28.9bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST/MA0138.2/Jaspar

Match Rank:1
Score:0.82
Offset:-3
Orientation:forward strand
Alignment:---AGCACCTTGGACA-----
TTCAGCACCATGGACAGCGCC
 A C G T A C G T A C G T C G T A C T A G T A G C C G T A A G T C A G T C G A C T A C G T A C T G T A C G G T C A A T G C C G T A A C G T A C G T A C G T A C G T A C G T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.81
Offset:-2
Orientation:reverse strand
Alignment:--AGCACCTTGGACA-----
TCAGCACCATGGACAGCTCC
 A C G T A C G T C G T A C T A G T A G C C G T A A G T C A G T C G A C T A C G T A C T G T A C G G T C A A T G C C G T A A C G T A C G T A C G T A C G T A C G T
A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.58
Offset:4
Orientation:forward strand
Alignment:AGCACCTTGGACA-
----CCAGGAACAG
 C G T A C T A G T A G C C G T A A G T C A G T C G A C T A C G T A C T G T A C G G T C A A T G C C G T A A C G T
A C G T A C G T A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G

Esrra/MA0592.2/Jaspar

Match Rank:4
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:AGCACCTTGGACA
ATGACCTTGAA--
 C G T A C T A G T A G C C G T A A G T C A G T C G A C T A C G T A C T G T A C G G T C A A T G C C G T A
C G T A A G C T T A C G T G C A T G A C T G A C A G C T A G C T A T C G C T G A T G C A A C G T A C G T

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:5
Score:0.55
Offset:-6
Orientation:forward strand
Alignment:------AGCACCTTGGACA
ACTCCAAGTACTTGGAA--
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C T A G T A G C C G T A A G T C A G T C G A C T A C G T A C T G T A C G G T C A A T G C C G T A
T C G A G T A C C G A T A T G C T A G C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A C T G T C A G T G C A G T C A A C G T A C G T

TCF3/MA0522.2/Jaspar

Match Rank:6
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AGCACCTTGGACA
AACACCTGCT---
 C G T A C T A G T A G C C G T A A G T C A G T C G A C T A C G T A C T G T A C G G T C A A T G C C G T A
G T C A T C G A A G T C G C T A A T G C A T G C G C A T T C A G A G T C C A G T A C G T A C G T A C G T

TCF4/MA0830.1/Jaspar

Match Rank:7
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AGCACCTTGGACA
CGCACCTGCT---
 C G T A C T A G T A G C C G T A A G T C A G T C G A C T A C G T A C T G T A C G G T C A A T G C C G T A
G A T C T C A G G A T C C G T A A T G C T A G C C G A T C T A G A T G C C G A T A C G T A C G T A C G T

PB0014.1_Esrra_1/Jaspar

Match Rank:8
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----AGCACCTTGGACA
NNNNATGACCTTGANTN
 A C G T A C G T A C G T A C G T C G T A C T A G T A G C C G T A A G T C A G T C G A C T A C G T A C T G T A C G G T C A A T G C C G T A
C A G T G T A C T C A G A G T C C G T A A G C T T C A G G C T A G A T C G T A C A G C T G A C T A T C G T C G A G T C A C A G T G T C A

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:9
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:AGCACCTTGGACA---
TGGACTTTGNNCTNTG
 C G T A C T A G T A G C C G T A A G T C A G T C G A C T A C G T A C T G T A C G G T C A A T G C C G T A A C G T A C G T A C G T
C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C G A C T A G T C C G A T C A T G

HNF4G/MA0484.1/Jaspar

Match Rank:10
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:AGCACCTTGGACA--
TGGACTTTGNNCTCN
 C G T A C T A G T A G C C G T A A G T C A G T C G A C T A C G T A C T G T A C G G T C A A T G C C G T A A C G T A C G T
C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T T C A G T C A G G T C A G A T C G A C T A G T C G C A T