Information for 5-CATGTTAGGT (Motif 13)

A G T C T C G A A C G T A C T G A G C T C G A T T C G A C T A G A T C G A C G T
Reverse Opposite:
C G T A A T G C A G T C A C G T C G T A C T G A A G T C C G T A A G C T A C T G
p-value:1e-10
log p-value:-2.428e+01
Information Content per bp:1.858
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif3.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.2 +/- 31.5bp
Average Position of motif in Background39.7 +/- 11.8bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0085.1_Irx4/Jaspar

Match Rank:1
Score:0.62
Offset:-7
Orientation:reverse strand
Alignment:-------CATGTTAGGT
NNTTTTACATGTANNNT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C T C G A A C G T A C T G A G C T C G A T T C G A C T A G A T C G A C G T
G C A T T A C G G C A T G C A T C A G T C G A T C G T A A G T C C G T A G C A T C T A G G C A T G C T A G A C T C G T A G C A T G C A T

PH0086.1_Irx5/Jaspar

Match Rank:2
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------CATGTTAGGT-
AATATACATGTAAAATT
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C T C G A A C G T A C T G A G C T C G A T T C G A C T A G A T C G A C G T A C G T
C G A T C G T A C G A T G C T A C G A T G C T A A G T C C G T A G C A T T C A G C G A T G C T A G T C A C G T A C G T A A C G T C G A T

PH0082.1_Irx2/Jaspar

Match Rank:3
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------CATGTTAGGT-
TAAATACATGTAAAATT
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C T C G A A C G T A C T G A G C T C G A T T C G A C T A G A T C G A C G T A C G T
C G A T C G T A C G T A C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A C G T A C T G A C G T A A C G T G C A T

PH0084.1_Irx3_2/Jaspar

Match Rank:4
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------CATGTTAGGT-
AATATACATGTAATATA
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C T C G A A C G T A C T G A G C T C G A T T C G A C T A G A T C G A C G T A C G T
C G T A C G T A C G A T C G T A C G A T C G T A G A T C C G T A G C A T C T A G C G A T G C T A T C G A C G A T C G T A G A C T C G A T

PB0121.1_Foxj3_2/Jaspar

Match Rank:5
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CATGTTAGGT----
NNCTTTGTTTTGNTNNN
 A C G T A C G T A C G T A G T C T C G A A C G T A C T G A G C T C G A T T C G A C T A G A T C G A C G T A C G T A C G T A C G T A C G T
G C A T A T G C G T A C C G A T G C A T C G A T C T A G C G A T C A G T C G A T A C G T C T A G C A T G G A C T T A C G G C A T A C G T

PH0083.1_Irx3_1/Jaspar

Match Rank:6
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------CATGTTAGGT-
AAAATACATGTAATACT
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C T C G A A C G T A C T G A G C T C G A T T C G A C T A G A T C G A C G T A C G T
C G T A C T G A C G A T C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A T G C A C G A T C G T A G A T C C G A T

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer

Match Rank:7
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CATGTTAGGT
TNCCATATATGG-
 A C G T A C G T A C G T A G T C T C G A A C G T A C T G A G C T C G A T T C G A C T A G A T C G A C G T
C A G T A C T G G A T C A G T C G C T A C G A T C G T A G C A T G C T A C G A T C T A G A T C G A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:8
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CATGTTAGGT--
TCNCCTGCTGNGNNN
 A C G T A C G T A C G T A G T C T C G A A C G T A C T G A G C T C G A T T C G A C T A G A T C G A C G T A C G T A C G T
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

PH0087.1_Irx6/Jaspar

Match Rank:9
Score:0.55
Offset:-6
Orientation:forward strand
Alignment:------CATGTTAGGT-
AAAATACATGTAAAAAT
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C T C G A A C G T A C T G A G C T C G A T T C G A C T A G A T C G A C G T A C G T
G C T A G C T A G C T A C T G A C G A T C G T A A G T C C G T A G C A T C T A G C G A T G C T A G T C A C G T A C G T A G C T A C G A T

TEF/MA0843.1/Jaspar

Match Rank:10
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CATGTTAGGT----
--NGTTACGTAATN
 A G T C T C G A A C G T A C T G A G C T C G A T T C G A C T A G A T C G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C A G G A C T C G A T T C G A A G T C C T A G A G C T G C T A C G T A A G C T T C G A