Information for 20-ATCATGCAGA (Motif 30)

C G T A A C G T A G T C C G T A A C G T A C T G A G T C C G T A A C T G C G T A
Reverse Opposite:
A C G T A G T C A C G T A C T G A G T C C G T A A C G T A C T G C G T A A C G T
p-value:1e-2
log p-value:-6.671e+00
Information Content per bp:1.530
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.25%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets55.0 +/- 33.5bp
Average Position of motif in Background47.6 +/- 33.7bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0148.1_Pou3f3/Jaspar

Match Rank:1
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---ATCATGCAGA----
TNNATTATGCATANNTT
 A C G T A C G T A C G T C G T A A C G T A G T C C G T A A C G T A C T G A G T C C G T A A C T G C G T A A C G T A C G T A C G T A C G T
G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T

POU2F2/MA0507.1/Jaspar

Match Rank:2
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:ATCATGCAGA----
-ATATGCAAATNNN
 C G T A A C G T A G T C C G T A A C G T A C T G A G T C C G T A A C T G C G T A A C G T A C G T A C G T A C G T
A C G T C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:ATCATGCAGA-
-TTATGCAAAT
 C G T A A C G T A G T C C G T A A C G T A C T G A G T C C G T A A C T G C G T A A C G T
A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T

POU2F1/MA0785.1/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:forward strand
Alignment:ATCATGCAGA--
AATATGCAAATT
 C G T A A C G T A G T C C G T A A C G T A C T G A G T C C G T A A C T G C G T A A C G T A C G T
G C T A C G T A G A C T C G T A A G C T C A T G A G T C C G T A C T G A C G T A C G A T C A G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.61
Offset:2
Orientation:forward strand
Alignment:ATCATGCAGA--
--CCTGCTGAGH
 C G T A A C G T A G T C C G T A A C G T A C T G A G T C C G T A A C T G C G T A A C G T A C G T
A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:6
Score:0.61
Offset:2
Orientation:forward strand
Alignment:ATCATGCAGA----
--TATGCWAATBAV
 C G T A A C G T A G T C C G T A A C G T A C T G A G T C C G T A A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:7
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----ATCATGCAGA-
CTTTGTTATGCAAAT
 A C G T A C G T A C G T A C G T C G T A A C G T A G T C C G T A A C G T A C T G A G T C C G T A A C T G C G T A A C G T
A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:8
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:ATCATGCAGA
GTCATN----
 C G T A A C G T A G T C C G T A A C G T A C T G A G T C C G T A A C T G C G T A
T C A G A C G T G A T C C G T A A G C T A T C G A C G T A C G T A C G T A C G T

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:9
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----ATCATGCAGA-
ATGCATWATGCATRW
 A C G T A C G T A C G T A C G T C G T A A C G T A G T C C G T A A C G T A C T G A G T C C G T A A C T G C G T A A C G T
C G T A A C G T A C T G G T A C C G T A A C G T C G T A C G T A A C G T A C T G A G T C C G T A A C G T C T G A G C A T

PBX1/MA0070.1/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--ATCATGCAGA
CCATCAATCAAA
 A C G T A C G T C G T A A C G T A G T C C G T A A C G T A C T G A G T C C G T A A C T G C G T A
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A