Information for 12-AGTGGCCCTA (Motif 18)

C G T A C A T G A C G T A C T G A C T G A G T C G T A C A G T C G C A T T C G A
Reverse Opposite:
A G C T C G T A A C T G A C T G A C T G G T A C A G T C C G T A G T A C C G A T
p-value:1e-9
log p-value:-2.189e+01
Information Content per bp:1.850
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.35%
Number of Background Sequences with motif171.2
Percentage of Background Sequences with motif0.36%
Average Position of motif in Targets41.1 +/- 23.0bp
Average Position of motif in Background49.8 +/- 27.5bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---AGTGGCCCTA
CCGATTGGCT---
 A C G T A C G T A C G T C G T A C A T G A C G T A C T G A C T G A G T C G T A C A G T C G C A T T C G A
A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T A C G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--AGTGGCCCTA
TGATTGGCTANN
 A C G T A C G T C G T A C A T G A C G T A C T G A C T G A G T C G T A C A G T C G C A T T C G A
A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

NR4A2/MA0160.1/Jaspar

Match Rank:3
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:AGTGGCCCTA
-GTGACCTT-
 C G T A C A T G A C G T A C T G A C T G A G T C G T A C A G T C G C A T T C G A
A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AGTGGCCCTA
NTTGGCANN-
 C G T A C A T G A C G T A C T G A C T G A G T C G T A C A G T C G C A T T C G A
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---AGTGGCCCTA
TTGAGTGSTT---
 A C G T A C G T A C G T C G T A C A T G A C G T A C T G A C T G A G T C G T A C A G T C G C A T T C G A
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AGTGGCCCTA
-TTGGCA---
 C G T A C A T G A C G T A C T G A C T G A G T C G T A C A G T C G C A T T C G A
A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AGTGGCCCTA----
NNNNTGACCCGGCGCG
 A C G T A C G T C G T A C A T G A C G T A C T G A C T G A G T C G T A C A G T C G C A T T C G A A C G T A C G T A C G T A C G T
C G A T T C G A T A G C A T C G A G C T T C A G G T C A G T A C G T A C A G T C T A C G T C A G G T A C A C T G G T A C A C T G

NKX2-3/MA0672.1/Jaspar

Match Rank:8
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----AGTGGCCCTA
NTCAAGTGGN----
 A C G T A C G T A C G T A C G T C G T A C A T G A C G T A C T G A C T G A G T C G T A C A G T C G C A T T C G A
A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:9
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:AGTGGCCCTA
--TGACCTYA
 C G T A C A T G A C G T A C T G A C T G A G T C G T A C A G T C G C A T T C G A
A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

PB0157.1_Rara_2/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AGTGGCCCTA----
NNCNTGACCCCGCTCT
 A C G T A C G T C G T A C A T G A C G T A C T G A C T G A G T C G T A C A G T C G C A T T C G A A C G T A C G T A C G T A C G T
A C G T T G C A T G A C C A G T G A C T T C A G C G T A G T A C G T A C A T G C T A G C T C A G G T A C C A G T G T A C C A G T