Information for 5-TGGCAGGCAG (Motif 7)

G C A T C T A G A C T G T G A C C G T A A C T G C T A G T A G C C G T A A C T G
Reverse Opposite:
T A G C G C A T A T C G G A T C T G A C G C A T A C T G T G A C G A T C C G T A
p-value:1e-13
log p-value:-3.163e+01
Information Content per bp:1.651
Number of Target Sequences with motif107.0
Percentage of Target Sequences with motif13.18%
Number of Background Sequences with motif2810.7
Percentage of Background Sequences with motif5.93%
Average Position of motif in Targets47.7 +/- 25.6bp
Average Position of motif in Background51.1 +/- 32.2bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-TGGCAGGCAG---
CTGGCAGNCTGCCA
 A C G T G C A T C T A G A C T G T G A C C G T A A C T G C T A G T A G C C G T A A C T G A C G T A C G T A C G T
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---TGGCAGGCAG
AGGTGNCAGACAG
 A C G T A C G T A C G T G C A T C T A G A C T G T G A C C G T A A C T G C T A G T A G C C G T A A C T G
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---TGGCAGGCAG
AGGTGHCAGACA-
 A C G T A C G T A C G T G C A T C T A G A C T G T G A C C G T A A C T G C T A G T A G C C G T A A C T G
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TGGCAGGCAG
TTGCCAAG---
 A C G T G C A T C T A G A C T G T G A C C G T A A C T G C T A G T A G C C G T A A C T G
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TGGCAGGCAG
TBGCACGCAA
 G C A T C T A G A C T G T G A C C G T A A C T G C T A G T A G C C G T A A C T G
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TGGCAGGCAG
NTTGGCANN---
 A C G T A C G T G C A T C T A G A C T G T G A C C G T A A C T G C T A G T A G C C G T A A C T G
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TGGCAGGCAG
TTGGCA-----
 A C G T G C A T C T A G A C T G T G A C C G T A A C T G C T A G T A G C C G T A A C T G
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:8
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TGGCAGGCAG
VBTGWCAGCB--
 A C G T A C G T G C A T C T A G A C T G T G A C C G T A A C T G C T A G T A G C C G T A A C T G
T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C A C G T A C G T

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:9
Score:0.61
Offset:2
Orientation:forward strand
Alignment:TGGCAGGCAG--
--ACAGGAAGTG
 G C A T C T A G A C T G T G A C C G T A A C T G C T A G T A G C C G T A A C T G A C G T A C G T
A C G T A C G T T C G A T A G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T T C A G

MEIS2/MA0774.1/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TGGCAGGCAG
TTGACAGC---
 A C G T G C A T C T A G A C T G T G A C C G T A A C T G C T A G T A G C C G T A A C T G
C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T A C G T