Information for 2-TGCCAAGTAA (Motif 3)

C G A T C A T G A T G C G T A C G T C A C T G A C T A G G C A T C T G A C T G A
Reverse Opposite:
G A C T G A C T C G T A G A T C G A C T C A G T C A T G T A C G G T A C G C T A
p-value:1e-35
log p-value:-8.200e+01
Information Content per bp:1.538
Number of Target Sequences with motif219.0
Percentage of Target Sequences with motif26.97%
Number of Background Sequences with motif5224.5
Percentage of Background Sequences with motif11.02%
Average Position of motif in Targets50.9 +/- 25.2bp
Average Position of motif in Background50.4 +/- 32.1bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.85
Offset:-2
Orientation:forward strand
Alignment:--TGCCAAGTAA
GGTGCCAAGT--
 A C G T A C G T C G A T C A T G A T G C G T A C G T C A C T G A C T A G G C A T C T G A C T G A
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.80
Offset:-2
Orientation:forward strand
Alignment:--TGCCAAGTAA
CGTGCCAAG---
 A C G T A C G T C G A T C A T G A T G C G T A C G T C A C T G A C T A G G C A T C T G A C T G A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.80
Offset:-1
Orientation:forward strand
Alignment:-TGCCAAGTAA
TTGCCAAG---
 A C G T C G A T C A T G A T G C G T A C G T C A C T G A C T A G G C A T C T G A C T G A
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:TGCCAAGTAA
TGCCAA----
 C G A T C A T G A T G C G T A C G T C A C T G A C T A G G C A T C T G A C T G A
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:5
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-TGCCAAGTAA
ATGCCAACC--
 A C G T C G A T C A T G A T G C G T A C G T C A C T G A C T A G G C A T C T G A C T G A
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:TGCCAAGTAA
TGCCCAGNHW
 C G A T C A T G A T G C G T A C G T C A C T G A C T A G G C A T C T G A C T G A
C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A

CREB3L1/MA0839.1/Jaspar

Match Rank:7
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-TGCCAAGTAA---
ATGCCACGTCATCA
 A C G T C G A T C A T G A T G C G T A C G T C A C T G A C T A G G C A T C T G A C T G A A C G T A C G T A C G T
T C G A G A C T C T A G G T A C G A T C C T G A A T G C T C A G C G A T T G A C C T G A A G C T G A T C C T G A

HIC2/MA0738.1/Jaspar

Match Rank:8
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-TGCCAAGTAA
ATGCCCACC--
 A C G T C G A T C A T G A T G C G T A C G T C A C T G A C T A G G C A T C T G A C T G A
T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C A C G T A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:9
Score:0.67
Offset:0
Orientation:forward strand
Alignment:TGCCAAGTAA
TGTCANYT--
 C G A T C A T G A T G C G T A C G T C A C T G A C T A G G C A T C T G A C T G A
A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T A C G T A C G T

CREB3/MA0638.1/Jaspar

Match Rank:10
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TGCCAAGTAA---
GTGCCACGTCATCA
 A C G T C G A T C A T G A T G C G T A C G T C A C T G A C T A G G C A T C T G A C T G A A C G T A C G T A C G T
T C A G A G C T C A T G G T A C A T G C C G T A A G T C C T A G G A C T T G A C C T G A A G C T G T A C T C G A