Information for 1-YTGGCHNNBTGCCARG (Motif 1)

G A C T C A G T A C T G C T A G T G A C G C A T T G A C T A C G A C T G C A G T A C T G A G T C A G T C G T C A C T G A T A C G
Reverse Opposite:
A T G C G A C T C A G T A C T G A C T G G T A C G T C A T G A C A T G C A C T G C G A T A C T G A G T C G T A C G T C A C T G A
p-value:1e-199
log p-value:-4.587e+02
Information Content per bp:1.567
Number of Target Sequences with motif227.0
Percentage of Target Sequences with motif27.96%
Number of Background Sequences with motif801.0
Percentage of Background Sequences with motif1.69%
Average Position of motif in Targets53.4 +/- 20.0bp
Average Position of motif in Background50.2 +/- 31.2bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.98
Offset:0
Orientation:reverse strand
Alignment:YTGGCHNNBTGCCARG
TTGGCANNNTGCCAAG
 G A C T C A G T A C T G C T A G T G A C G C A T T G A C T A C G A C T G C A G T A C T G A G T C A G T C G T C A C T G A T A C G
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.90
Offset:1
Orientation:reverse strand
Alignment:YTGGCHNNBTGCCARG
-TGGCAGNCTGCCAG-
 G A C T C A G T A C T G C T A G T G A C G C A T T G A C T A C G A C T G C A G T A C T G A G T C A G T C G T C A C T G A T A C G
A C G T C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:3
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:YTGGCHNNBTGCCARG
TTGGCATGGTGCCA--
 G A C T C A G T A C T G C T A G T G A C G C A T T G A C T A C G A C T G C A G T A C T G A G T C A G T C G T C A C T G A T A C G
G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.69
Offset:9
Orientation:reverse strand
Alignment:YTGGCHNNBTGCCARG
---------TGCCAA-
 G A C T C A G T A C T G C T A G T G A C G C A T T G A C T A C G A C T G C A G T A C T G A G T C A G T C G T C A C T G A T A C G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.68
Offset:7
Orientation:forward strand
Alignment:YTGGCHNNBTGCCARG
-------CGTGCCAAG
 G A C T C A G T A C T G C T A G T G A C G C A T T G A C T A C G A C T G C A G T A C T G A G T C A G T C G T C A C T G A T A C G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIA/MA0670.1/Jaspar

Match Rank:6
Score:0.61
Offset:7
Orientation:forward strand
Alignment:YTGGCHNNBTGCCARG-
-------GGTGCCAAGT
 G A C T C A G T A C T G C T A G T G A C G C A T T G A C T A C G A C T G C A G T A C T G A G T C A G T C G T C A C T G A T A C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.60
Offset:8
Orientation:forward strand
Alignment:YTGGCHNNBTGCCARG
--------TTGCCAAG
 G A C T C A G T A C T G C T A G T G A C G C A T T G A C T A C G A C T G C A G T A C T G A G T C A G T C G T C A C T G A T A C G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:8
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---YTGGCHNNBTGCCARG
CAKCTGKYCYYTTYCCC--
 A C G T A C G T A C G T G A C T C A G T A C T G C T A G T G A C G C A T T G A C T A C G A C T G C A G T A C T G A G T C A G T C G T C A C T G A T A C G
T G A C G C T A A C G T T G A C C G A T A C T G A C T G A G T C A G T C A G T C A G C T A G C T A G C T A G C T G A T C T G A C G T A C A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:9
Score:0.58
Offset:8
Orientation:forward strand
Alignment:YTGGCHNNBTGCCARG-
--------ATGCCAACC
 G A C T C A G T A C T G C T A G T G A C G C A T T G A C T A C G A C T G C A G T A C T G A G T C A G T C G T C A C T G A T A C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

THAP1/MA0597.1/Jaspar

Match Rank:10
Score:0.55
Offset:8
Orientation:forward strand
Alignment:YTGGCHNNBTGCCARG-
--------CTGCCCGCA
 G A C T C A G T A C T G C T A G T G A C G C A T T G A C T A C G A C T G C A G T A C T G A G T C A G T C G T C A C T G A T A C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A