Information for 2-CTGCCCNTGGDGCTGM (Motif 3)

A G T C A C G T A T C G A T G C A G T C G T A C C T A G A C G T C T A G A C T G C G T A A C T G A T G C C G A T A T C G G T C A
Reverse Opposite:
C A G T A T G C C G T A A T C G A G T C G C A T A G T C A G T C G T C A G A T C A C T G C T A G T A C G A T G C C G T A A C T G
p-value:1e-11
log p-value:-2.721e+01
Information Content per bp:1.685
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif4.00%
Number of Background Sequences with motif41.8
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets48.3 +/- 29.8bp
Average Position of motif in Background43.1 +/- 27.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:1
Score:0.78
Offset:-4
Orientation:forward strand
Alignment:----CTGCCCNTGGDGCTGM
GGAGCTGTCCATGGTGCTGA
 A C G T A C G T A C G T A C G T A G T C A C G T A T C G A T G C A G T C G T A C C T A G A C G T C T A G A C T G C G T A A C T G A T G C C G A T A T C G G T C A
C T A G A T C G G T C A C A T G A G T C G A C T T A C G C A G T A G T C A G T C C T G A C G A T C T A G A T C G G A C T A T C G A G T C G A C T C T A G T C G A

REST/MA0138.2/Jaspar

Match Rank:2
Score:0.78
Offset:-4
Orientation:reverse strand
Alignment:----CTGCCCNTGGDGCTGM-
GGCGCTGTCCATGGTGCTGAA
 A C G T A C G T A C G T A C G T A G T C A C G T A T C G A T G C A G T C G T A C C T A G A C G T C T A G A C T G C G T A A C T G A T G C C G A T A T C G G T C A A C G T
C T A G A T C G G T A C C A T G A G T C C G A T T A C G C A G T A G T C A G T C C T G A C G A T C T A G T A C G G A C T T A C G A T G C A G C T C T A G T C G A G T C A

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:3
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CTGCCCNTGGDGCTGM
-TGCCCTGAGGGCA--
 A G T C A C G T A T C G A T G C A G T C G T A C C T A G A C G T C T A G A C T G C G T A A C T G A T G C C G A T A T C G G T C A
A C G T G C A T A T C G A G T C A G T C A G T C A G C T A T C G T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:4
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CTGCCCNTGGDGCTGM
-TGCCCTNAGGGCA--
 A G T C A C G T A T C G A T G C A G T C G T A C C T A G A C G T C T A G A C T G C G T A A C T G A T G C C G A T A T C G G T C A
A C G T G C A T A T C G A G T C A G T C A G T C A G C T T G A C T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T

TFAP2C(var.3)/MA0815.1/Jaspar

Match Rank:5
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CTGCCCNTGGDGCTGM
-TGCCCTGAGGGCA--
 A G T C A C G T A T C G A T G C A G T C G T A C C T A G A C G T C T A G A C T G C G T A A C T G A T G C C G A T A T C G G T C A
A C G T G C A T A T C G A G T C A G T C A G T C A G C T A T C G T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CTGCCCNTGGDGCTGM
CTGACCTTTG------
 A G T C A C G T A T C G A T G C A G T C G T A C C T A G A C G T C T A G A C T G C G T A A C T G A T G C C G A T A T C G G T C A
A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T A C G T A C G T A C G T A C G T A C G T

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:7
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:CTGCCCNTGGDGCTGM
-TGCCCNGGGGCA---
 A G T C A C G T A T C G A T G C A G T C G T A C C T A G A C G T C T A G A C T G C G T A A C T G A T G C C G A T A T C G G T C A
A C G T G A C T T A C G T A G C A G T C A G T C A C T G T C A G T C A G T C A G A T C G A T G C C T G A A C G T A C G T A C G T

TFAP2B/MA0811.1/Jaspar

Match Rank:8
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:CTGCCCNTGGDGCTGM
-TGCCCTNGGGCA---
 A G T C A C G T A T C G A T G C A G T C G T A C C T A G A C G T C T A G A C T G C G T A A C T G A T G C C G A T A T C G G T C A
A C G T G A C T T A C G A T G C A G T C A G T C A G C T T C A G T C A G C T A G A T C G A T G C C T G A A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:9
Score:0.52
Offset:0
Orientation:forward strand
Alignment:CTGCCCNTGGDGCTGM
CTGCCCGCA-------
 A G T C A C G T A T C G A T G C A G T C G T A C C T A G A C G T C T A G A C T G C G T A A C T G A T G C C G A T A T C G G T C A
A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-CTGCCCNTGGDGCTGM
GCTGTG-----------
 A C G T A G T C A C G T A T C G A T G C A G T C G T A C C T A G A C G T C T A G A C T G C G T A A C T G A T G C C G A T A T C G G T C A
T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T