Information for 5-CGGACAGCCC (Motif 19)

A T G C A C T G A C T G G T C A A G T C C T G A A C T G A G T C A T G C A G T C
Reverse Opposite:
A C T G A T C G A C T G A G T C A G C T A C T G A C G T A G T C A G T C A T C G
p-value:1e-5
log p-value:-1.237e+01
Information Content per bp:1.901
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif2.22%
Number of Background Sequences with motif45.7
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets51.9 +/- 23.2bp
Average Position of motif in Background52.8 +/- 28.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.60
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REL/MA0101.1/Jaspar

Match Rank:1
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CGGACAGCCC-
-GGAAANCCCC
 A T G C A C T G A C T G G T C A A G T C C T G A A C T G A G T C A T G C A G T C A C G T
A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CGGACAGCCC
--CACAGN--
 A T G C A C T G A C T G G T C A A G T C C T G A A C T G A G T C A T G C A G T C
A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CGGACAGCCC-
-GGAAATCCCC
 A T G C A C T G A C T G G T C A A G T C C T G A A C T G A G T C A T G C A G T C A C G T
A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C

RELA/MA0107.1/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CGGACAGCCC-
-GGAAATTCCC
 A T G C A C T G A C T G G T C A A G T C C T G A A C T G A G T C A T G C A G T C A C G T
A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:5
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CGGACAGCCC---
-GGACCACCCACG
 A T G C A C T G A C T G G T C A A G T C C T G A A C T G A G T C A T G C A G T C A C G T A C G T A C G T
A C G T C T A G A T C G T C G A G T A C A G T C G C T A A T G C G T A C G A T C C G T A T A G C T C A G

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.59
Offset:4
Orientation:forward strand
Alignment:CGGACAGCCC
----CAGCC-
 A T G C A C T G A C T G G T C A A G T C C T G A A C T G A G T C A T G C A G T C
A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CGGACAGCCC
TTGACAGC--
 A T G C A C T G A C T G G T C A A G T C C T G A A C T G A G T C A T G C A G T C
C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CGGACAGCCC
VBTGWCAGCB-
 A C G T A T G C A C T G A C T G G T C A A G T C C T G A A C T G A G T C A T G C A G T C
T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C A C G T

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:9
Score:0.57
Offset:-9
Orientation:reverse strand
Alignment:---------CGGACAGCCC-
TCAGCACCATGGACAGCTCC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A C T G A C T G G T C A A G T C C T G A A C T G A G T C A T G C A G T C A C G T
A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CGGACAGCCC
CCAGACAG---
 A C G T A T G C A C T G A C T G G T C A A G T C C T G A A C T G A G T C A T G C A G T C
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T