Information for 3-CAATTATTTAKTWAAC (Motif 3)

G A T C C G T A C G T A C G A T A C G T G T C A A G C T A C G T A G C T C G T A C A G T A G C T G C T A C G T A C G T A T A G C
Reverse Opposite:
A T C G A C G T A C G T C G A T C T G A G T A C A C G T T C G A C G T A C T G A A C G T C G T A C G T A C G A T A C G T C T A G
p-value:1e-12
log p-value:-2.904e+01
Information Content per bp:1.759
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif2.71%
Number of Background Sequences with motif5.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets37.0 +/- 29.6bp
Average Position of motif in Background53.2 +/- 22.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0010.1_Homeobox_class/Jaspar

Match Rank:1
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:CAATTATTTAKTWAAC
-AATTATT--------
 G A T C C G T A C G T A C G A T A C G T G T C A A G C T A C G T A G C T C G T A C A G T A G C T G C T A C G T A C G T A T A G C
A C G T G C T A G C T A G A C T G A C T C G T A G C A T C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0197.1_Zfp105_2/Jaspar

Match Rank:2
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CAATTATTTAKTWAAC
NAAANTTATTGAANCAN-
 A C G T A C G T G A T C C G T A C G T A C G A T A C G T G T C A A G C T A C G T A G C T C G T A C A G T A G C T G C T A C G T A C G T A T A G C
G A T C G T C A T C G A G T C A T C G A C G A T A G C T T C G A A C G T A C G T A C T G T C G A T G C A A G T C G T A C T C G A G A C T A C G T

PH0132.1_Pax6/Jaspar

Match Rank:3
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CAATTATTTAKTWAAC
GNNAATTAATTAATCA--
 A C G T A C G T G A T C C G T A C G T A C G A T A C G T G T C A A G C T A C G T A G C T C G T A C A G T A G C T G C T A C G T A C G T A T A G C
C A T G G C A T A T G C T G C A T G C A G A C T G C A T T C G A G C T A C G A T A C G T C G T A C T G A A C G T G A T C T C G A A C G T A C G T

Lhx3/MA0135.1/Jaspar

Match Rank:4
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CAATTATTTAKTWAAC
AAATTAATTAATC---
 G A T C C G T A C G T A C G A T A C G T G T C A A G C T A C G T A G C T C G T A C A G T A G C T G C T A C G T A C G T A T A G C
C G T A T C G A C G T A A C G T A C G T C G T A C G T A G A C T A G C T G C T A C G T A G A C T A G T C A C G T A C G T A C G T

PH0146.1_Pou3f1/Jaspar

Match Rank:5
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CAATTATTTAKTWAAC
AATTAATTAATTAATTC--
 A C G T A C G T A C G T G A T C C G T A C G T A C G A T A C G T G T C A A G C T A C G T A G C T C G T A C A G T A G C T G C T A C G T A C G T A T A G C
C T G A T G C A A G C T C A G T G T C A G C T A C G A T C G A T G C T A C G T A C A G T C A G T G T C A T C G A A C G T C G A T G T A C A C G T A C G T

PH0147.1_Pou3f2/Jaspar

Match Rank:6
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CAATTATTTAKTWAAC
GATAATTAATTAGTTTG-
 A C G T A C G T G A T C C G T A C G T A C G A T A C G T G T C A A G C T A C G T A G C T C G T A C A G T A G C T G C T A C G T A C G T A T A G C
T A C G C G A T C G A T C G T A G C T A G A C T A G C T G C T A C G T A C G A T A C G T G C T A C T A G A C G T C A G T G A C T C T A G A C G T

PH0149.1_Pou3f4/Jaspar

Match Rank:7
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CAATTATTTAKTWAAC
AATTAATTAATTAATTC--
 A C G T A C G T A C G T G A T C C G T A C G T A C G A T A C G T G T C A A G C T A C G T A G C T C G T A C A G T A G C T G C T A C G T A C G T A T A G C
C T G A T G C A G C A T C A G T G T C A G C T A C G A T C G A T G C T A C G T A C A G T C A G T G C T A C T G A C A G T C G A T A G T C A C G T A C G T

PH0119.1_Nkx6-1_2/Jaspar

Match Rank:8
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----CAATTATTTAKTWAAC
GANGTAATTAATTANN----
 A C G T A C G T A C G T A C G T G A T C C G T A C G T A C G A T A C G T G T C A A G C T A C G T A G C T C G T A C A G T A G C T G C T A C G T A C G T A T A G C
T C A G C T G A T G C A T C A G G A C T T G C A C G T A C G A T G A C T C T G A G C T A C G A T C G A T C T G A A G T C A G C T A C G T A C G T A C G T A C G T

PH0008.1_Barx2/Jaspar

Match Rank:9
Score:0.63
Offset:-6
Orientation:reverse strand
Alignment:------CAATTATTTAKTWAAC
NANAANTAATTANTTA------
 A C G T A C G T A C G T A C G T A C G T A C G T G A T C C G T A C G T A C G A T A C G T G T C A A G C T A C G T A G C T C G T A C A G T A G C T G C T A C G T A C G T A T A G C
G A C T C T G A G A C T G T C A T C G A A G T C G A C T G T C A G C T A C A G T C A G T C T G A T G A C A G C T C G A T C G T A A C G T A C G T A C G T A C G T A C G T A C G T

PH0093.1_Lhx3/Jaspar

Match Rank:10
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CAATTATTTAKTWAAC
GAAATTAATTAAATAAT
 A C G T G A T C C G T A C G T A C G A T A C G T G T C A A G C T A C G T A G C T C G T A C A G T A G C T G C T A C G T A C G T A T A G C
T A C G C G A T G T C A T C G A G A C T G A C T C T G A C G T A C G A T A G C T C T G A C T G A C G T A C G A T G T C A G T C A A C G T