Information for 1-CCHTTDCCATGCCATT (Motif 1)

A T G C A G T C G A T C A C G T A C G T C A T G A T G C A T G C C T G A C G A T C T A G A G T C G T A C C G T A C G A T A C G T
Reverse Opposite:
C G T A C G T A A C G T A C T G A C T G A G T C C G T A A G C T A T C G A T C G G A T C C G T A C G T A C A T G A C T G A T C G
p-value:1e-16
log p-value:-3.868e+01
Information Content per bp:1.782
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif2.71%
Number of Background Sequences with motif0.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets34.2 +/- 24.8bp
Average Position of motif in Background11.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CCHTTDCCATGCCATT
-CATTGTTATGCAAAT
 A T G C A G T C G A T C A C G T A C G T C A T G A T G C A T G C C T G A C G A T C T A G A G T C G T A C C G T A C G A T A C G T
A C G T G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:2
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CCHTTDCCATGCCATT
-CTTTGTTATGCAAAT
 A T G C A G T C G A T C A C G T A C G T C A T G A T G C A T G C C T G A C G A T C T A G A G T C G T A C C G T A C G A T A C G T
A C G T A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.55
Offset:7
Orientation:forward strand
Alignment:CCHTTDCCATGCCATT
-------CGTGCCAAG
 A T G C A G T C G A T C A C G T A C G T C A T G A T G C A T G C C T G A C G A T C T A G A G T C G T A C C G T A C G A T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

Pou2f3/MA0627.1/Jaspar

Match Rank:4
Score:0.54
Offset:4
Orientation:forward strand
Alignment:CCHTTDCCATGCCATT----
----TTGTATGCAAATTAGA
 A T G C A G T C G A T C A C G T A C G T C A T G A T G C A T G C C T G A C G A T C T A G A G T C G T A C C G T A C G A T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

PH0145.1_Pou2f3/Jaspar

Match Rank:5
Score:0.54
Offset:4
Orientation:forward strand
Alignment:CCHTTDCCATGCCATT----
----TTGTATGCAAATTAGA
 A T G C A G T C G A T C A C G T A C G T C A T G A T G C A T G C C T G A C G A T C T A G A G T C G T A C C G T A C G A T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.54
Offset:9
Orientation:reverse strand
Alignment:CCHTTDCCATGCCATT
---------TGCCAA-
 A T G C A G T C G A T C A C G T A C G T C A T G A T G C A T G C C T G A C G A T C T A G A G T C G T A C C G T A C G A T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:CCHTTDCCATGCCATT-
---TTGCCATGGCAACC
 A T G C A G T C G A T C A C G T A C G T C A T G A T G C A T G C C T G A C G A T C T A G A G T C G T A C C G T A C G A T A C G T A C G T
A C G T A C G T A C G T A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

NFIA/MA0670.1/Jaspar

Match Rank:8
Score:0.53
Offset:7
Orientation:forward strand
Alignment:CCHTTDCCATGCCATT-
-------GGTGCCAAGT
 A T G C A G T C G A T C A C G T A C G T C A T G A T G C A T G C C T G A C G A T C T A G A G T C G T A C C G T A C G A T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

PH0144.1_Pou2f2/Jaspar

Match Rank:9
Score:0.53
Offset:4
Orientation:forward strand
Alignment:CCHTTDCCATGCCATT----
----TTGTATGCAAATTAGA
 A T G C A G T C G A T C A C G T A C G T C A T G A T G C A T G C C T G A C G A T C T A G A G T C G T A C C G T A C G A T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A

PB0098.1_Zfp410_1/Jaspar

Match Rank:10
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:CCHTTDCCATGCCATT---
--NNNTCCATCCCATAANN
 A T G C A G T C G A T C A C G T A C G T C A T G A T G C A T G C C T G A C G A T C T A G A G T C G T A C C G T A C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C A T G T C A A C G T T G A C G A T C G C T A A G C T G A T C G A T C G A T C C G T A C A G T G C T A G T C A A G C T G C T A