Information for 4-ATCATAACAAAGA (Motif 4)

C G T A A C G T G T A C C G T A A C G T C G T A C T G A A G T C C G T A C G T A C G T A C T A G C G T A
Reverse Opposite:
C G A T A G T C A C G T A C G T C G A T A C T G A G C T A C G T C G T A C G A T A C T G G T C A C G A T
p-value:1e-15
log p-value:-3.657e+01
Information Content per bp:1.860
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets42.6 +/- 21.1bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0123.1_Foxl1_2/Jaspar

Match Rank:1
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--ATCATAACAAAGA-
ATATCAAAACAAAACA
 A C G T A C G T C G T A A C G T G T A C C G T A A C G T C G T A C T G A A G T C C G T A C G T A C G T A C T A G C G T A A C G T
G C T A C G A T C G T A C G A T G A T C G C T A G C T A G T C A C G T A A G T C C G T A C G T A G T C A C G T A G T A C G T C A

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:2
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---ATCATAACAAAGA
ATTTGCATAACAAAG-
 A C G T A C G T A C G T C G T A A C G T G T A C C G T A A C G T C G T A C T G A A G T C C G T A C G T A C G T A C T A G C G T A
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:3
Score:0.69
Offset:0
Orientation:forward strand
Alignment:ATCATAACAAAGA----
AGAAGAACAAAGGACTA
 C G T A A C G T G T A C C G T A A C G T C G T A C T G A A G T C C G T A C G T A C G T A C T A G C G T A A C G T A C G T A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0121.1_Foxj3_2/Jaspar

Match Rank:4
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---ATCATAACAAAGA-
AACACCAAAACAAAGGA
 A C G T A C G T A C G T C G T A A C G T G T A C C G T A A C G T C G T A C T G A A G T C C G T A C G T A C G T A C T A G C G T A A C G T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

PB0061.1_Sox11_1/Jaspar

Match Rank:5
Score:0.68
Offset:0
Orientation:forward strand
Alignment:ATCATAACAAAGA----
ATAAGAACAAAGGACTA
 C G T A A C G T G T A C C G T A A C G T C G T A C T G A A G T C C G T A C G T A C G T A C T A G C G T A A C G T A C G T A C G T A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0120.1_Foxj1_2/Jaspar

Match Rank:6
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--ATCATAACAAAGA
ATGTCACAACAACAC
 A C G T A C G T C G T A A C G T G T A C C G T A A C G T C G T A C T G A A G T C C G T A C G T A C G T A C T A G C G T A
C G T A A G C T T C A G A C G T T A G C T C G A A G T C C T G A G T C A T G A C C G T A C T G A A T G C T C G A G T A C

PB0119.1_Foxa2_2/Jaspar

Match Rank:7
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-ATCATAACAAAGA-
AAAAATAACAAACGG
 A C G T C G T A A C G T G T A C C G T A A C G T C G T A C T G A A G T C C G T A C G T A C G T A C T A G C G T A A C G T
T C G A T C G A C G T A C G T A G T C A A C G T C T G A C G T A G A T C G T C A G C T A C T G A T A G C T A C G A T C G

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---ATCATAACAAAGA
ATTTGCATAACAATG-
 A C G T A C G T A C G T C G T A A C G T G T A C C G T A A C G T C G T A C T G A A G T C C G T A C G T A C G T A C T A G C G T A
G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G A C G T

PB0062.1_Sox12_1/Jaspar

Match Rank:9
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-ATCATAACAAAGA
NTTNAGAACAATTA
 A C G T C G T A A C G T G T A C C G T A A C G T C G T A C T G A A G T C C G T A C G T A C G T A C T A G C G T A
C A T G C G A T C G A T C A G T C G T A A C T G C T G A G C T A A G T C G C T A C G T A G C A T C G A T C T G A

PB0148.1_Mtf1_2/Jaspar

Match Rank:10
Score:0.63
Offset:1
Orientation:forward strand
Alignment:ATCATAACAAAGA--
-AAATAAGAAAAAAC
 C G T A A C G T G T A C C G T A A C G T C G T A C T G A A G T C C G T A C G T A C G T A C T A G C G T A A C G T A C G T
A C G T G C T A C G T A G C T A C A G T G C T A G C T A C A T G G T C A G C T A G C T A G C T A T G C A C G T A T G A C