Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
1 |
| Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer | 1e-197 | -4.543e+02 | 0.0000 | 206.0 | 27.39% | 635.8 | 1.36% | motif file (matrix) |
svg |
2 |
| Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer | 1e-196 | -4.526e+02 | 0.0000 | 252.0 | 33.51% | 1233.3 | 2.65% | motif file (matrix) |
svg |
3 |
| TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer | 1e-106 | -2.460e+02 | 0.0000 | 97.0 | 12.90% | 199.4 | 0.43% | motif file (matrix) |
svg |
4 |
| OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-81 | -1.888e+02 | 0.0000 | 97.0 | 12.90% | 368.5 | 0.79% | motif file (matrix) |
svg |
5 |
| Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer | 1e-51 | -1.177e+02 | 0.0000 | 214.0 | 28.46% | 4258.7 | 9.14% | motif file (matrix) |
svg |
6 |
| Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer | 1e-40 | -9.359e+01 | 0.0000 | 186.0 | 24.73% | 3891.5 | 8.35% | motif file (matrix) |
svg |
7 |
| Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer | 1e-38 | -8.782e+01 | 0.0000 | 179.0 | 23.80% | 3799.6 | 8.15% | motif file (matrix) |
svg |
8 |
| Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer | 1e-33 | -7.665e+01 | 0.0000 | 119.0 | 15.82% | 2007.3 | 4.31% | motif file (matrix) |
svg |
9 |
| Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer | 1e-28 | -6.525e+01 | 0.0000 | 122.0 | 16.22% | 2385.1 | 5.12% | motif file (matrix) |
svg |
10 |
| Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer | 1e-27 | -6.378e+01 | 0.0000 | 94.0 | 12.50% | 1506.4 | 3.23% | motif file (matrix) |
svg |
11 |
| Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer | 1e-26 | -6.051e+01 | 0.0000 | 109.0 | 14.49% | 2065.8 | 4.43% | motif file (matrix) |
svg |
12 |
| Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer | 1e-23 | -5.377e+01 | 0.0000 | 75.0 | 9.97% | 1141.3 | 2.45% | motif file (matrix) |
svg |
13 |
| Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-21 | -4.997e+01 | 0.0000 | 65.0 | 8.64% | 926.4 | 1.99% | motif file (matrix) |
svg |
14 |
| Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer | 1e-21 | -4.865e+01 | 0.0000 | 58.0 | 7.71% | 758.8 | 1.63% | motif file (matrix) |
svg |
15 |
| Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer | 1e-20 | -4.680e+01 | 0.0000 | 86.0 | 11.44% | 1648.7 | 3.54% | motif file (matrix) |
svg |
16 |
| Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer | 1e-18 | -4.249e+01 | 0.0000 | 45.0 | 5.98% | 520.1 | 1.12% | motif file (matrix) |
svg |
17 |
| Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-18 | -4.197e+01 | 0.0000 | 66.0 | 8.78% | 1117.4 | 2.40% | motif file (matrix) |
svg |
18 |
| Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer | 1e-15 | -3.566e+01 | 0.0000 | 83.0 | 11.04% | 1875.2 | 4.02% | motif file (matrix) |
svg |
19 |
| Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-7 | -1.831e+01 | 0.0000 | 246.0 | 32.71% | 11027.0 | 23.66% | motif file (matrix) |
svg |
20 |
| TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer | 1e-7 | -1.791e+01 | 0.0000 | 62.0 | 8.24% | 1764.5 | 3.79% | motif file (matrix) |
svg |
21 |
| Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer | 1e-7 | -1.696e+01 | 0.0000 | 156.0 | 20.74% | 6328.6 | 13.58% | motif file (matrix) |
svg |
22 |
| Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer | 1e-6 | -1.448e+01 | 0.0000 | 28.0 | 3.72% | 580.1 | 1.24% | motif file (matrix) |
svg |
23 |
| TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer | 1e-6 | -1.382e+01 | 0.0000 | 50.0 | 6.65% | 1466.3 | 3.15% | motif file (matrix) |
svg |
24 |
| CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-5 | -1.315e+01 | 0.0000 | 13.0 | 1.73% | 153.7 | 0.33% | motif file (matrix) |
svg |
25 |
| Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer | 1e-5 | -1.285e+01 | 0.0000 | 66.0 | 8.78% | 2235.0 | 4.80% | motif file (matrix) |
svg |
26 |
| BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-5 | -1.219e+01 | 0.0001 | 18.0 | 2.39% | 311.5 | 0.67% | motif file (matrix) |
svg |
27 |
| Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer | 1e-5 | -1.182e+01 | 0.0001 | 113.0 | 15.03% | 4631.1 | 9.94% | motif file (matrix) |
svg |
28 |
| Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer | 1e-4 | -1.139e+01 | 0.0001 | 70.0 | 9.31% | 2530.6 | 5.43% | motif file (matrix) |
svg |
29 |
| TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer | 1e-4 | -1.071e+01 | 0.0003 | 36.0 | 4.79% | 1036.1 | 2.22% | motif file (matrix) |
svg |
30 |
| Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer | 1e-4 | -1.029e+01 | 0.0004 | 98.0 | 13.03% | 4022.8 | 8.63% | motif file (matrix) |
svg |
31 |
| CHR(?)/Hela-CellCycle-Expression/Homer | 1e-4 | -9.975e+00 | 0.0005 | 50.0 | 6.65% | 1697.2 | 3.64% | motif file (matrix) |
svg |
32 |
| Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer | 1e-4 | -9.457e+00 | 0.0009 | 47.0 | 6.25% | 1595.3 | 3.42% | motif file (matrix) |
svg |
33 |
| Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer | 1e-4 | -9.219e+00 | 0.0011 | 44.0 | 5.85% | 1474.3 | 3.16% | motif file (matrix) |
svg |
34 |
| HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer | 1e-3 | -9.174e+00 | 0.0011 | 32.0 | 4.26% | 947.3 | 2.03% | motif file (matrix) |
svg |
35 |
| GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer | 1e-3 | -9.080e+00 | 0.0012 | 64.0 | 8.51% | 2433.2 | 5.22% | motif file (matrix) |
svg |
36 |
| Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-3 | -8.658e+00 | 0.0018 | 15.0 | 1.99% | 304.3 | 0.65% | motif file (matrix) |
svg |
37 |
| Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer | 1e-3 | -8.640e+00 | 0.0018 | 19.0 | 2.53% | 448.8 | 0.96% | motif file (matrix) |
svg |
38 |
| Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer | 1e-3 | -7.485e+00 | 0.0054 | 95.0 | 12.63% | 4195.8 | 9.00% | motif file (matrix) |
svg |
39 |
| SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer | 1e-3 | -7.158e+00 | 0.0073 | 231.0 | 30.72% | 11898.1 | 25.53% | motif file (matrix) |
svg |
40 |
| REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer | 1e-3 | -7.114e+00 | 0.0074 | 3.0 | 0.40% | 11.2 | 0.02% | motif file (matrix) |
svg |
41 |
| SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer | 1e-3 | -6.957e+00 | 0.0084 | 54.0 | 7.18% | 2136.2 | 4.58% | motif file (matrix) |
svg |
42 |
| EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer | 1e-2 | -6.879e+00 | 0.0089 | 59.0 | 7.85% | 2395.0 | 5.14% | motif file (matrix) |
svg |
43 |
| Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer | 1e-2 | -6.826e+00 | 0.0092 | 26.0 | 3.46% | 819.8 | 1.76% | motif file (matrix) |
svg |
44 |
| EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer | 1e-2 | -6.644e+00 | 0.0108 | 15.0 | 1.99% | 371.1 | 0.80% | motif file (matrix) |
svg |
45 |
| Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer | 1e-2 | -6.587e+00 | 0.0111 | 19.0 | 2.53% | 533.8 | 1.15% | motif file (matrix) |
svg |
46 |
| Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer | 1e-2 | -6.351e+00 | 0.0138 | 130.0 | 17.29% | 6277.6 | 13.47% | motif file (matrix) |
svg |
47 |
| Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer | 1e-2 | -6.270e+00 | 0.0147 | 23.0 | 3.06% | 720.9 | 1.55% | motif file (matrix) |
svg |
48 |
| FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer | 1e-2 | -6.246e+00 | 0.0147 | 52.0 | 6.91% | 2107.1 | 4.52% | motif file (matrix) |
svg |
49 |
| Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer | 1e-2 | -6.179e+00 | 0.0154 | 30.0 | 3.99% | 1042.3 | 2.24% | motif file (matrix) |
svg |
50 |
| Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer | 1e-2 | -6.000e+00 | 0.0180 | 44.0 | 5.85% | 1731.8 | 3.72% | motif file (matrix) |
svg |
51 |
| Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer | 1e-2 | -5.938e+00 | 0.0188 | 44.0 | 5.85% | 1737.7 | 3.73% | motif file (matrix) |
svg |
52 |
| BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer | 1e-2 | -5.924e+00 | 0.0188 | 29.0 | 3.86% | 1014.3 | 2.18% | motif file (matrix) |
svg |
53 |
| Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer | 1e-2 | -5.862e+00 | 0.0195 | 225.0 | 29.92% | 11836.0 | 25.40% | motif file (matrix) |
svg |
54 |
| JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer | 1e-2 | -5.808e+00 | 0.0202 | 25.0 | 3.32% | 838.1 | 1.80% | motif file (matrix) |
svg |
55 |
| Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer | 1e-2 | -5.773e+00 | 0.0206 | 14.0 | 1.86% | 367.4 | 0.79% | motif file (matrix) |
svg |
56 |
| Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer | 1e-2 | -5.630e+00 | 0.0233 | 101.0 | 13.43% | 4792.5 | 10.28% | motif file (matrix) |
svg |
57 |
| Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer | 1e-2 | -5.376e+00 | 0.0296 | 97.0 | 12.90% | 4615.0 | 9.90% | motif file (matrix) |
svg |
58 |
| FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer | 1e-2 | -5.217e+00 | 0.0340 | 55.0 | 7.31% | 2377.4 | 5.10% | motif file (matrix) |
svg |
59 |
| Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer | 1e-2 | -5.090e+00 | 0.0380 | 67.0 | 8.91% | 3028.9 | 6.50% | motif file (matrix) |
svg |
60 |
| Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer | 1e-2 | -5.012e+00 | 0.0404 | 28.0 | 3.72% | 1037.9 | 2.23% | motif file (matrix) |
svg |
61 |
| RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer | 1e-2 | -4.959e+00 | 0.0419 | 30.0 | 3.99% | 1138.3 | 2.44% | motif file (matrix) |
svg |