Information for 3-CAGCAGGATTTCCTTW (Motif 5)

T G A C C T G A A T C G A G T C C G T A C T A G A C T G C T G A C G A T A C G T A C G T A T G C G A T C C G A T C G A T G C T A
Reverse Opposite:
C G A T C G T A G C T A C T A G A T C G C G T A C G T A G C T A G A C T G T A C A G T C C G A T A C T G A T G C A G C T A C T G
p-value:1e-14
log p-value:-3.283e+01
Information Content per bp:1.727
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.60%
Number of Background Sequences with motif22.5
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets42.8 +/- 24.4bp
Average Position of motif in Background46.1 +/- 21.7bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:1
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CAGCAGGATTTCCTTW
-ANCAGGATGT-----
 T G A C C T G A A T C G A G T C C G T A C T A G A C T G C T G A C G A T A C G T A C G T A T G C G A T C C G A T C G A T G C T A
A C G T C G T A T A G C G T A C G T C A A C T G A C T G C G T A C G A T T A C G A G C T A C G T A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CAGCAGGATTTCCTTW
CACAGCAGGGGG------
 A C G T A C G T T G A C C T G A A T C G A G T C C G T A C T A G A C T G C T G A C G A T A C G T A C G T A T G C G A T C C G A T C G A T G C T A
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T A C G T A C G T A C G T

Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer

Match Rank:3
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CAGCAGGATTTCCTTW-
ACATCTGGWWTYAATTAR
 A C G T T G A C C T G A A T C G A G T C C G T A C T A G A C T G C T G A C G A T A C G T A C G T A T G C G A T C C G A T C G A T G C T A A C G T
T G C A G T A C C G T A A C G T T G A C C G A T A C T G A C T G C G A T C G A T G C A T A G C T G C T A C T G A A C G T G A C T G C T A C T G A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CAGCAGGATTTCCTTW
DCHCAGCAGGRGGCC----
 A C G T A C G T A C G T T G A C C T G A A T C G A G T C C G T A C T A G A C T G C T G A C G A T A C G T A C G T A T G C G A T C C G A T C G A T G C T A
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----CAGCAGGATTTCCTTW
CCACACAGCAGGAGA------
 A C G T A C G T A C G T A C G T A C G T T G A C C T G A A T C G A G T C C G T A C T A G A C T G C T G A C G A T A C G T A C G T A T G C G A T C C G A T C G A T G C T A
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:6
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CAGCAGGATTTCCTTW
DCTCAGCAGG---------
 A C G T A C G T A C G T T G A C C T G A A T C G A G T C C G T A C T A G A C T G C T G A C G A T A C G T A C G T A T G C G A T C C G A T C G A T G C T A
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:7
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----CAGCAGGATTTCCTTW
CCACACAGCAGGAGA------
 A C G T A C G T A C G T A C G T A C G T T G A C C T G A A T C G A G T C C G T A C T A G A C T G C T G A C G A T A C G T A C G T A T G C G A T C C G A T C G A T G C T A
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T A C G T A C G T A C G T

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:8
Score:0.54
Offset:7
Orientation:forward strand
Alignment:CAGCAGGATTTCCTTW-
-------ATTTCCTGTN
 T G A C C T G A A T C G A G T C C G T A C T A G A C T G C T G A C G A T A C G T A C G T A T G C G A T C C G A T C G A T G C T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G C T A C G T A C G T A G T C A G T C A C G T A T C G G A C T A T C G

PB0207.1_Zic3_2/Jaspar

Match Rank:9
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----CAGCAGGATTTCCTTW
GAGCACAGCAGGACA------
 A C G T A C G T A C G T A C G T A C G T T G A C C T G A A T C G A G T C C G T A C T A G A C T G C T G A C G A T A C G T A C G T A T G C G A T C C G A T C G A T G C T A
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer

Match Rank:10
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CAGCAGGATTTCCTTW
--CCWGGAATGY----
 T G A C C T G A A T C G A G T C C G T A C T A G A C T G C T G A C G A T A C G T A C G T A T G C G A T C C G A T C G A T G C T A
A C G T A C G T A T G C G A T C C G A T C T A G A C T G G C T A C G T A A G C T A C T G A G C T A C G T A C G T A C G T A C G T