Information for 11-AGACACAGGCTTT (Motif 11)

C G T A A C T G C G T A A G T C C G T A G T A C C G T A A C T G A C T G A G T C A C G T A C G T C A G T
Reverse Opposite:
G C T A G T C A C G T A C T A G A G T C A G T C A C G T A C T G A C G T A C T G A C G T A G T C A C G T
p-value:1e-8
log p-value:-1.971e+01
Information Content per bp:1.929
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets56.2 +/- 34.1bp
Average Position of motif in Background73.8 +/- 4.4bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0166.1_Sox12_2/Jaspar

Match Rank:1
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----AGACACAGGCTTT
AAACAGACAAAGGAAT-
 A C G T A C G T A C G T A C G T C G T A A C T G C G T A A G T C C G T A G T A C C G T A A C T G A C T G A G T C A C G T A C G T C A G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:2
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-AGACACAGGCTTT
AAAACAAAGG----
 A C G T C G T A A C T G C G T A A G T C C G T A G T A C C G T A A C T G A C T G A G T C A C G T A C G T C A G T
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:AGACACAGGCTTT
---CACAGN----
 C G T A A C T G C G T A A G T C C G T A G T A C C G T A A C T G A C T G A G T C A C G T A C G T C A G T
A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:4
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:AGACACAGGCTTT
-AACAAAGG----
 C G T A A C T G C G T A A G T C C G T A G T A C C G T A A C T G A C T G A G T C A C G T A C G T C A G T
A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:5
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGACACAGGCTTT
AGCCTCAGGCA--
 C G T A A C T G C G T A A G T C C G T A G T A C C G T A A C T G A C T G A G T C A C G T A C G T C A G T
G T C A T A C G A T G C A G T C A G C T T A G C T G C A T C A G T A C G T A G C C G T A A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:6
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-AGACACAGGCTTT
AAAACAATGG----
 A C G T C G T A A C T G C G T A A G T C C G T A G T A C C G T A A C T G A C T G A G T C A C G T A C G T C A G T
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T A C G T A C G T A C G T

SOX10/MA0442.1/Jaspar

Match Rank:7
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:AGACACAGGCTTT
--ACAAAG-----
 C G T A A C T G C G T A A G T C C G T A G T A C C G T A A C T G A C T G A G T C A C G T A C G T C A G T
A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T A C G T A C G T A C G T

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:8
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AGACACAGGCTTT
AGCCTCAGGCA--
 C G T A A C T G C G T A A G T C C G T A G T A C C G T A A C T G A C T G A G T C A C G T A C G T C A G T
G T C A T A C G A T G C A G T C A G C T T A G C T C G A T C A G A T C G T A G C C G T A A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--AGACACAGGCTTT
CCAGACAG-------
 A C G T A C G T C G T A A C T G C G T A A G T C C G T A G T A C C G T A A C T G A C T G A G T C A C G T A C G T C A G T
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:10
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:AGACACAGGCTTT
-RACAAWGG----
 C G T A A C T G C G T A A G T C C G T A G T A C C G T A A C T G A C T G A G T C A C G T A C G T C A G T
A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T