Information for 3-CACGCGAGGGCRCTGC (Motif 3)

A T G C T C G A A T G C C T A G T A G C T A C G T C G A T C A G T C A G A C T G A G T C C T A G T A G C C G A T A C T G A G T C
Reverse Opposite:
T A C G G T A C G C T A A T C G G A T C C T A G G T A C A G T C A G T C A C G T A G T C A T C G G A T C A T C G A G C T A T C G
p-value:1e-12
log p-value:-2.898e+01
Information Content per bp:1.653
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.78%
Number of Background Sequences with motif57.1
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets46.4 +/- 29.8bp
Average Position of motif in Background53.4 +/- 34.8bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0091.1_Zbtb3_1/Jaspar

Match Rank:1
Score:0.62
Offset:5
Orientation:forward strand
Alignment:CACGCGAGGGCRCTGC------
-----AATCGCACTGCATTCCG
 A T G C T C G A A T G C C T A G T A G C T A C G T C G A T C A G T C A G A C T G A G T C C T A G T A G C C G A T A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:2
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----CACGCGAGGGCRCTGC
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A C G T A T G C T C G A A T G C C T A G T A G C T A C G T C G A T C A G T C A G A C T G A G T C C T A G T A G C C G A T A C T G A G T C
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CACGCGAGGGCRCTGC--
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A T G C T C G A A T G C C T A G T A G C T A C G T C G A T C A G T C A G A C T G A G T C C T A G T A G C C G A T A C T G A G T C A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:4
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CACGCGAGGGCRCTGC
TCACCTCTGGGCAG---
 A C G T A T G C T C G A A T G C C T A G T A G C T A C G T C G A T C A G T C A G A C T G A G T C C T A G T A G C C G A T A C T G A G T C
G A C T G T A C C T G A A G T C G A T C A G C T A T G C G C A T C T A G C T A G C A T G A G T C C G T A A C T G A C G T A C G T A C G T

CTCF/MA0139.1/Jaspar

Match Rank:5
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----CACGCGAGGGCRCTGC
TGGCCACCAGGGGGCGCTA-
 A C G T A C G T A C G T A C G T A T G C T C G A A T G C C T A G T A G C T A C G T C G A T C A G T C A G A C T G A G T C C T A G T A G C C G A T A C T G A G T C
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A A C G T

TFAP2B/MA0811.1/Jaspar

Match Rank:6
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CACGCGAGGGCRCTGC
TGCCCCAGGGCA----
 A T G C T C G A A T G C C T A G T A G C T A C G T C G A T C A G T C A G A C T G A G T C C T A G T A G C C G A T A C T G A G T C
G A C T T A C G A T G C G A T C A G T C A G T C T C G A T C A G T C A G T A C G A T G C C T G A A C G T A C G T A C G T A C G T

PB0086.1_Tcfap2b_1/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CACGCGAGGGCRCTGC
TTGCCCTAGGGCAT---
 A C G T A T G C T C G A A T G C C T A G T A G C T A C G T C G A T C A G T C A G A C T G A G T C C T A G T A G C C G A T A C T G A G T C
C G A T G A C T T A C G A T G C A G T C A G T C A G C T T C G A T C A G C T A G A T C G A T G C C T G A C G A T A C G T A C G T A C G T

KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer

Match Rank:8
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:CACGCGAGGGCRCTGC--
---NNVDGGGYGGGGCYN
 A T G C T C G A A T G C C T A G T A G C T A C G T C G A T C A G T C A G A C T G A G T C C T A G T A G C C G A T A C T G A G T C A C G T A C G T
A C G T A C G T A C G T T A C G T G A C T C A G C T G A A C T G A C T G A C T G A G C T A C T G A C T G C T A G A C T G A G T C A G T C C T G A

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:9
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CACGCGAGGGCRCTGC
TGCCCCCGGGCA----
 A T G C T C G A A T G C C T A G T A G C T A C G T C G A T C A G T C A G A C T G A G T C C T A G T A G C C G A T A C T G A G T C
G A C T T A C G T A G C A G T C A G T C A G T C T G A C T C A G T C A G A T C G A T G C C T G A A C G T A C G T A C G T A C G T

Sp1(Zf)/Promoter/Homer

Match Rank:10
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:CACGCGAGGGCRCTGC-
-----GGGGGCGGGGCC
 A T G C T C G A A T G C C T A G T A G C T A C G T C G A T C A G T C A G A C T G A G T C C T A G T A G C C G A T A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T T C A G C A T G C T A G A C T G A C T G A G T C A C T G A C T G C T A G T A C G A G T C A T G C