Information for 6-AGAGGACAAAAGG (Motif 2)

C G T A A C T G C G T A A C T G A C T G C G T A A G T C C G T A C G T A G T C A C G T A A C T G A C T G
Reverse Opposite:
A G T C A G T C A C G T A C G T A C G T A C G T A C T G A C G T A G T C A G T C A C G T A G T C C G A T
p-value:1e-13
log p-value:-3.089e+01
Information Content per bp:1.907
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets29.7 +/- 23.8bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-AGAGGACAAAAGG-
ARGAGGMCAAAATGW
 A C G T C G T A A C T G C G T A A C T G A C T G C G T A A G T C C G T A C G T A G T C A C G T A A C T G A C T G A C G T
T G C A C T A G C T A G C T G A C A T G A C T G T G C A G A T C G T C A T G C A G T C A G T C A A G C T C T A G G C A T

Sox3/MA0514.1/Jaspar

Match Rank:2
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:AGAGGACAAAAGG
--AAAACAAAGG-
 C G T A A C T G C G T A A C T G A C T G C G T A A G T C C G T A C G T A G T C A C G T A A C T G A C T G
A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T

Nr2f6(var.2)/MA0728.1/Jaspar

Match Rank:3
Score:0.69
Offset:1
Orientation:forward strand
Alignment:AGAGGACAAAAGG---
-GAGGTCAAAAGGTCA
 C G T A A C T G C G T A A C T G A C T G C G T A A G T C C G T A C G T A G T C A C G T A A C T G A C T G A C G T A C G T A C G T
A C G T T C A G C T G A A C T G C T A G A C G T A G T C G T C A C G T A C T G A C G T A A C T G A C T G C G A T A G T C C T G A

RARA/MA0729.1/Jaspar

Match Rank:4
Score:0.68
Offset:1
Orientation:forward strand
Alignment:AGAGGACAAAAGG------
-GAGGTCAAAAGGTCAATG
 C G T A A C T G C G T A A C T G A C T G C G T A A G T C C G T A C G T A G T C A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C T A G T C G A A C T G C A T G A G C T T A G C C T G A C G T A C G T A T G C A A C T G A C T G C G A T A G T C C T G A G C T A C A G T A C T G

Rarb/MA0857.1/Jaspar

Match Rank:5
Score:0.67
Offset:0
Orientation:forward strand
Alignment:AGAGGACAAAAGG---
AAAGGTCAAAAGGTCA
 C G T A A C T G C G T A A C T G A C T G C G T A A G T C C G T A C G T A G T C A C G T A A C T G A C T G A C G T A C G T A C G T
G C T A C T G A T C G A A C T G A C T G C A G T A T G C C T G A G C T A C T G A C T G A C T A G A C T G A G C T A G T C C T G A

Rarg/MA0859.1/Jaspar

Match Rank:6
Score:0.67
Offset:1
Orientation:forward strand
Alignment:AGAGGACAAAAGG----
-AAGGTCAAAAGGTCAA
 C G T A A C T G C G T A A C T G A C T G C G T A A G T C C G T A C G T A G T C A C G T A A C T G A C T G A C G T A C G T A C G T A C G T
A C G T T C G A T C G A C T A G A C T G A C G T A G T C T C G A C G T A C T G A T C G A A C T G A C T G A C G T A G T C T C G A G C T A

NR2F1/MA0017.2/Jaspar

Match Rank:7
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-AGAGGACAAAAGG
CAAAGGTCAAGGG-
 A C G T C G T A A C T G C G T A A C T G A C T G C G T A A G T C C G T A C G T A G T C A C G T A A C T G A C T G
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:8
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AGAGGACAAAAGG
TRAGGTCA-----
 C G T A A C T G C G T A A C T G A C T G C G T A A G T C C G T A C G T A G T C A C G T A A C T G A C T G
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:9
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:AGAGGACAAAAGG
--AAAACAATGG-
 C G T A A C T G C G T A A C T G A C T G C G T A A G T C C G T A C G T A G T C A C G T A A C T G A C T G
A C G T A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:AGAGGACAAAAGG
---GAACAATGGN
 C G T A A C T G C G T A A C T G A C T G C G T A A G T C C G T A C G T A G T C A C G T A A C T G A C T G
A C G T A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G