Information for 11-HCTSATTTCAAAR (Motif 7)

G T A C A T G C A C G T T A G C G T C A C G A T C G A T C G A T T A G C C G T A G C T A G T C A T C A G
Reverse Opposite:
A G T C A C G T C G A T C G A T A C T G C G T A C G T A G C T A C A G T A T C G C G T A T A C G C A G T
p-value:1e-12
log p-value:-2.819e+01
Information Content per bp:1.618
Number of Target Sequences with motif51.0
Percentage of Target Sequences with motif6.64%
Number of Background Sequences with motif971.6
Percentage of Background Sequences with motif2.04%
Average Position of motif in Targets54.7 +/- 24.5bp
Average Position of motif in Background49.2 +/- 29.9bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.70
Offset:4
Orientation:forward strand
Alignment:HCTSATTTCAAAR-
----ACATCAAAGG
 G T A C A T G C A C G T T A G C G T C A C G A T C G A T C G A T T A G C C G T A G C T A G T C A T C A G A C G T
A C G T A C G T A C G T A C G T C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:2
Score:0.64
Offset:4
Orientation:forward strand
Alignment:HCTSATTTCAAAR-
----ACWTCAAAGG
 G T A C A T G C A C G T T A G C G T C A C G A T C G A T C G A T T A G C C G T A G C T A G T C A T C A G A C G T
A C G T A C G T A C G T A C G T C G T A A T G C C G A T A C G T A G T C C G T A C G T A C G T A C T A G A T C G

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:3
Score:0.64
Offset:4
Orientation:forward strand
Alignment:HCTSATTTCAAAR---
----ACATCAAAGGNA
 G T A C A T G C A C G T T A G C G T C A C G A T C G A T C G A T T A G C C G T A G C T A G T C A T C A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A A T G C G C T A G C A T A T G C C G T A T C G A C T G A C T A G T C A G T A C G G T C A

TCF7L2/MA0523.1/Jaspar

Match Rank:4
Score:0.63
Offset:2
Orientation:forward strand
Alignment:HCTSATTTCAAAR---
--AAAGATCAAAGGAA
 G T A C A T G C A C G T T A G C G T C A C G A T C G A T C G A T T A G C C G T A G C T A G T C A T C A G A C G T A C G T A C G T
A C G T A C G T C T G A T C G A C T G A A T C G G C T A C G A T T A G C C G T A T C G A C T G A T C A G T C A G T C G A G T C A

PB0083.1_Tcf7_1/Jaspar

Match Rank:5
Score:0.61
Offset:1
Orientation:forward strand
Alignment:HCTSATTTCAAAR-----
-TATAGATCAAAGGAAAA
 G T A C A T G C A C G T T A G C G T C A C G A T C G A T C G A T T A G C C G T A G C T A G T C A T C A G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C T A G C A T C G T A A T C G C G T A G C A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G T C A G C A T G C T A

PB0082.1_Tcf3_1/Jaspar

Match Rank:6
Score:0.61
Offset:1
Orientation:forward strand
Alignment:HCTSATTTCAAAR-----
-TATAGATCAAAGGAAAA
 G T A C A T G C A C G T T A G C G T C A C G A T C G A T C G A T T A G C C G T A G C T A G T C A T C A G A C G T A C G T A C G T A C G T A C G T
A C G T G A C T G C T A G C A T C G T A A T C G C G T A G C A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G C T A G C T A G C T A

PB0040.1_Lef1_1/Jaspar

Match Rank:7
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:HCTSATTTCAAAR-----
-NANAGATCAAAGGGNNN
 G T A C A T G C A C G T T A G C G T C A C G A T C G A T C G A T T A G C C G T A G C T A G T C A T C A G A C G T A C G T A C G T A C G T A C G T
A C G T A C T G G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C A G G C T A G A C T G A C T

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:8
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:HCTSATTTCAAAR-----
-NNNAGATCAAAGGANNN
 G T A C A T G C A C G T T A G C G T C A C G A T C G A T C G A T T A G C C G T A G C T A G T C A T C A G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G T C A G C T A G C A T

LIN54/MA0619.1/Jaspar

Match Rank:9
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:HCTSATTTCAAAR
----NATTCAAAT
 G T A C A T G C A C G T T A G C G T C A C G A T C G A T C G A T T A G C C G T A G C T A G T C A T C A G
A C G T A C G T A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:10
Score:0.57
Offset:2
Orientation:forward strand
Alignment:HCTSATTTCAAAR
--CGGTTTCAAA-
 G T A C A T G C A C G T T A G C G T C A C G A T C G A T C G A T T A G C C G T A G C T A G T C A T C A G
A C G T A C G T T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T