Information for 1-BYCWTTGTYATGCAAA (Motif 1)

A G T C A G T C G A T C C G A T A G C T C A G T T A C G C G A T G A C T C G T A C A G T C A T G A G T C C G T A C T G A G C T A
Reverse Opposite:
C G A T G A C T G C A T T C A G G T A C G T C A G C A T C T G A G C T A A T G C G C T A C T G A G C T A C T A G T C A G T C A G
p-value:1e-227
log p-value:-5.245e+02
Information Content per bp:1.622
Number of Target Sequences with motif229.0
Percentage of Target Sequences with motif32.48%
Number of Background Sequences with motif714.9
Percentage of Background Sequences with motif1.52%
Average Position of motif in Targets53.1 +/- 18.4bp
Average Position of motif in Background50.4 +/- 32.4bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:1
Score:0.95
Offset:2
Orientation:forward strand
Alignment:BYCWTTGTYATGCAAA-
--CTTTGTTATGCAAAT
 A G T C A G T C G A T C C G A T A G C T C A G T T A C G C G A T G A C T C G T A C A G T C A T G A G T C C G T A C T G A G C T A A C G T
A C G T A C G T A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.94
Offset:2
Orientation:reverse strand
Alignment:BYCWTTGTYATGCAAA-
--CATTGTTATGCAAAT
 A G T C A G T C G A T C C G A T A G C T C A G T T A C G C G A T G A C T C G T A C A G T C A T G A G T C C G T A C T G A G C T A A C G T
A C G T A C G T G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.70
Offset:7
Orientation:reverse strand
Alignment:BYCWTTGTYATGCAAA-
-------TTATGCAAAT
 A G T C A G T C G A T C C G A T A G C T C A G T T A C G C G A T G A C T C G T A C A G T C A T G A G T C C G T A C T G A G C T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T

POU3F1/MA0786.1/Jaspar

Match Rank:4
Score:0.68
Offset:7
Orientation:forward strand
Alignment:BYCWTTGTYATGCAAA---
-------TTATGCAAATTA
 A G T C A G T C G A T C C G A T A G C T C A G T T A C G C G A T G A C T C G T A C A G T C A T G A G T C C G T A C T G A G C T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T G C A T C T G A G A C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A

POU5F1B/MA0792.1/Jaspar

Match Rank:5
Score:0.67
Offset:8
Orientation:forward strand
Alignment:BYCWTTGTYATGCAAA-
--------TATGCAAAT
 A G T C A G T C G A T C C G A T A G C T C A G T T A C G C G A T G A C T C G T A C A G T C A T G A G T C C G T A C T G A G C T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:6
Score:0.67
Offset:1
Orientation:forward strand
Alignment:BYCWTTGTYATGCAAA
-CCATTGTTNY-----
 A G T C A G T C G A T C C G A T A G C T C A G T T A C G C G A T G A C T C G T A C A G T C A T G A G T C C G T A C T G A G C T A
A C G T A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T A C G T A C G T A C G T A C G T A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.67
Offset:8
Orientation:forward strand
Alignment:BYCWTTGTYATGCAAA----
--------TATGCWAATBAV
 A G T C A G T C G A T C C G A T A G C T C A G T T A C G C G A T G A C T C G T A C A G T C A T G A G T C C G T A C T G A G C T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

POU2F1/MA0785.1/Jaspar

Match Rank:8
Score:0.67
Offset:6
Orientation:forward strand
Alignment:BYCWTTGTYATGCAAA--
------AATATGCAAATT
 A G T C A G T C G A T C C G A T A G C T C A G T T A C G C G A T G A C T C G T A C A G T C A T G A G T C C G T A C T G A G C T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C T A C G T A G A C T C G T A A G C T C A T G A G T C C G T A C T G A C G T A C G A T C A G T

POU2F2/MA0507.1/Jaspar

Match Rank:9
Score:0.66
Offset:7
Orientation:reverse strand
Alignment:BYCWTTGTYATGCAAA----
-------ATATGCAAATNNN
 A G T C A G T C G A T C C G A T A G C T C A G T T A C G C G A T G A C T C G T A C A G T C A T G A G T C C G T A C T G A G C T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:10
Score:0.66
Offset:1
Orientation:forward strand
Alignment:BYCWTTGTYATGCAAA
-CCWTTGTY-------
 A G T C A G T C G A T C C G A T A G C T C A G T T A C G C G A T G A C T C G T A C A G T C A T G A G T C C G T A C T G A G C T A
A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T