Information for 9-CGGTCCGTCA (Motif 6)

G A T C A C T G A C T G A C G T G T A C A G T C A C T G A C G T A G T C C G T A
Reverse Opposite:
G A C T T C A G C G T A A G T C A C T G A C T G C G T A A G T C A G T C C A T G
p-value:1e-13
log p-value:-3.091e+01
Information Content per bp:1.865
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.19%
Number of Background Sequences with motif11.1
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets42.3 +/- 26.8bp
Average Position of motif in Background53.8 +/- 20.9bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Atf1/MA0604.1/Jaspar

Match Rank:1
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:CGGTCCGTCA-
---TACGTCAT
 G A T C A C T G A C T G A C G T G T A C A G T C A C T G A C G T A G T C C G T A A C G T
A C G T A C G T A C G T A G C T C T G A A G T C A C T G A C G T T G A C C G T A A G C T

POL013.1_MED-1/Jaspar

Match Rank:2
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CGGTCCGTCA
-GCTCCG---
 G A T C A C T G A C T G A C G T G T A C A G T C A C T G A C G T A G T C C G T A
A C G T A C T G A G T C A C G T A G T C A G T C A T C G A C G T A C G T A C G T

PB0094.1_Zfp128_1/Jaspar

Match Rank:3
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CGGTCCGTCA----
TTNGGGTACGCCNNANN
 A C G T A C G T A C G T G A T C A C T G A C T G A C G T G T A C A G T C A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T
G A C T C A G T C T G A T C A G A T C G A C T G A C G T C G T A A G T C C T A G G A T C G T A C G T C A G T C A C G T A C T A G T G C A

MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer

Match Rank:4
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CGGTCCGTCA
--GGCVGTTR
 G A T C A C T G A C T G A C G T G T A C A G T C A C T G A C G T A G T C C G T A
A C G T A C G T C T A G C T A G A G T C T C A G A C T G A C G T A C G T C T G A

MF0002.1_bZIP_CREB/G-box-like_subclass/Jaspar

Match Rank:5
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:CGGTCCGTCA
----ACGTCA
 G A T C A C T G A C T G A C G T G T A C A G T C A C T G A C G T A G T C C G T A
A C G T A C G T A C G T A C G T C T G A A G T C T C A G A C G T G T A C C G T A

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CGGTCCGTCA-
NCTGTCAATCAN
 A C G T G A T C A C T G A C T G A C G T G T A C A G T C A C T G A C G T A G T C C G T A A C G T
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:7
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CGGTCCGTCA-
SCTGTCAVTCAV
 A C G T G A T C A C T G A C T G A C G T G T A C A G T C A C T G A C G T A G T C C G T A A C G T
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

Crem/MA0609.1/Jaspar

Match Rank:8
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CGGTCCGTCA--
--TTACGTCATN
 G A T C A C T G A C T G A C G T G T A C A G T C A C T G A C G T A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T C G T A A G T C A C T G A C G T G T A C C G T A A G C T G T C A

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:9
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CGGTCCGTCA
GSCTGTCACTCA
 A C G T A C G T G A T C A C T G A C T G A C G T G T A C A G T C A C T G A C G T A G T C C G T A
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A

BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer

Match Rank:10
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CGGTCCGTCA-
-BRRCVGTTDN
 G A T C A C T G A C T G A C G T G T A C A G T C A C T G A C G T A G T C C G T A A C G T
A C G T A G C T C T A G C T A G A G T C T G C A A C T G A C G T C G A T C G T A T C A G