Information for 5-CVSARAACAATGG (Motif 2)

G A T C T A G C A T C G T G C A C T A G T C G A C T G A A G T C C G T A C G T A C G A T C A T G T A C G
Reverse Opposite:
A T G C G A T C C G T A A C G T A C G T A C T G A G C T A G C T A G T C A C G T T A G C A T C G C T A G
p-value:1e-74
log p-value:-1.726e+02
Information Content per bp:1.647
Number of Target Sequences with motif101.0
Percentage of Target Sequences with motif12.05%
Number of Background Sequences with motif413.6
Percentage of Background Sequences with motif0.95%
Average Position of motif in Targets49.5 +/- 19.4bp
Average Position of motif in Background49.2 +/- 32.9bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox6/MA0515.1/Jaspar

Match Rank:1
Score:0.96
Offset:3
Orientation:reverse strand
Alignment:CVSARAACAATGG
---AAAACAATGG
 G A T C T A G C A T C G T G C A C T A G T C G A C T G A A G T C C G T A C G T A C G A T C A T G T A C G
A C G T A C G T A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:2
Score:0.96
Offset:3
Orientation:reverse strand
Alignment:CVSARAACAATGG
---VRAACAATGG
 G A T C T A G C A T C G T G C A C T A G T C G A C T G A A G T C C G T A C G T A C G A T C A T G T A C G
A C G T A C G T A C G T T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:3
Score:0.95
Offset:4
Orientation:forward strand
Alignment:CVSARAACAATGG-
----RAACAATGGN
 G A T C T A G C A T C G T G C A C T A G T C G A C T G A A G T C C G T A C G T A C G A T C A T G T A C G A C G T
A C G T A C G T A C G T A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.95
Offset:4
Orientation:reverse strand
Alignment:CVSARAACAATGG-
----GAACAATGGN
 G A T C T A G C A T C G T G C A C T A G T C G A C T G A A G T C C G T A C G T A C G A T C A T G T A C G A C G T
A C G T A C G T A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:5
Score:0.93
Offset:3
Orientation:reverse strand
Alignment:CVSARAACAATGG
---RNAACAATGG
 G A T C T A G C A T C G T G C A C T A G T C G A C T G A A G T C C G T A C G T A C G A T C A T G T A C G
A C G T A C G T A C G T T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G

SOX9/MA0077.1/Jaspar

Match Rank:6
Score:0.92
Offset:4
Orientation:reverse strand
Alignment:CVSARAACAATGG
----GAACAATGG
 G A T C T A G C A T C G T G C A C T A G T C G A C T G A A G T C C G T A C G T A C G A T C A T G T A C G
A C G T A C G T A C G T A C G T C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:7
Score:0.92
Offset:3
Orientation:reverse strand
Alignment:CVSARAACAATGG
---VRRACAAWGG
 G A T C T A G C A T C G T G C A C T A G T C G A C T G A A G T C C G T A C G T A C G A T C A T G T A C G
A C G T A C G T A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:8
Score:0.91
Offset:5
Orientation:reverse strand
Alignment:CVSARAACAATGG
-----RACAAWGG
 G A T C T A G C A T C G T G C A C T A G T C G A C T G A A G T C C G T A C G T A C G A T C A T G T A C G
A C G T A C G T A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G

Sox2/MA0143.3/Jaspar

Match Rank:9
Score:0.91
Offset:5
Orientation:reverse strand
Alignment:CVSARAACAATGG
-----AACAAAGG
 G A T C T A G C A T C G T G C A C T A G T C G A C T G A A G T C C G T A C G T A C G A T C A T G T A C G
A C G T A C G T A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G

Sox3/MA0514.1/Jaspar

Match Rank:10
Score:0.90
Offset:3
Orientation:reverse strand
Alignment:CVSARAACAATGG
---AAAACAAAGG
 G A T C T A G C A T C G T G C A C T A G T C G A C T G A A G T C C G T A C G T A C G A T C A T G T A C G
A C G T A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G