Information for 15-TCTGCCCTTA (Motif 12)

A G C T A G T C C G A T A T C G G A T C A G T C A G T C C A G T G A C T G T C A
Reverse Opposite:
C A G T C T G A G T C A C T A G A C T G C T A G T A G C C G T A T C A G T C G A
p-value:1e-9
log p-value:-2.187e+01
Information Content per bp:1.713
Number of Target Sequences with motif47.0
Percentage of Target Sequences with motif5.61%
Number of Background Sequences with motif856.4
Percentage of Background Sequences with motif1.96%
Average Position of motif in Targets51.8 +/- 23.1bp
Average Position of motif in Background50.5 +/- 28.7bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THAP1/MA0597.1/Jaspar

Match Rank:1
Score:0.85
Offset:1
Orientation:forward strand
Alignment:TCTGCCCTTA
-CTGCCCGCA
 A G C T A G T C C G A T A T C G G A T C A G T C A G T C C A G T G A C T G T C A
A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:TCTGCCCTTA
--TGACCTYA
 A G C T A G T C C G A T A T C G G A T C A G T C A G T C C A G T G A C T G T C A
A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

PB0133.1_Hic1_2/Jaspar

Match Rank:3
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---TCTGCCCTTA---
GGGTGTGCCCAAAAGG
 A C G T A C G T A C G T A G C T A G T C C G A T A T C G G A T C A G T C A G T C C A G T G A C T G T C A A C G T A C G T A C G T
C A T G A T C G C A T G C A G T C T A G A C G T C T A G A G T C A G T C G T A C G T C A C G T A C G T A G T C A C T A G T A C G

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:TCTGCCCTTA-
-CTGACCTTTG
 A G C T A G T C C G A T A T C G G A T C A G T C A G T C C A G T G A C T G T C A A C G T
A C G T A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G

NR4A2/MA0160.1/Jaspar

Match Rank:5
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:TCTGCCCTTA
-GTGACCTT-
 A G C T A G T C C G A T A T C G G A T C A G T C A G T C C A G T G A C T G T C A
A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:6
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:TCTGCCCTTA
--TGACCT--
 A G C T A G T C C G A T A T C G G A T C A G T C A G T C C A G T G A C T G T C A
A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.65
Offset:1
Orientation:forward strand
Alignment:TCTGCCCTTA-
-NTGACCTTGA
 A G C T A G T C C G A T A T C G G A T C A G T C A G T C C A G T G A C T G T C A A C G T
A C G T C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:8
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TCTGCCCTTA
BNTGDCCTTG
 A G C T A G T C C G A T A T C G G A T C A G T C A G T C C A G T G A C T G T C A
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G

HIC2/MA0738.1/Jaspar

Match Rank:9
Score:0.64
Offset:1
Orientation:forward strand
Alignment:TCTGCCCTTA
-ATGCCCACC
 A G C T A G T C C G A T A T C G G A T C A G T C A G T C C A G T G A C T G T C A
A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C

RORA/MA0071.1/Jaspar

Match Rank:10
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:TCTGCCCTTA--
--TGACCTTGAT
 A G C T A G T C C G A T A T C G G A T C A G T C A G T C C A G T G A C T G T C A A C G T A C G T
A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T