Information for 7-CCBGCTGGGR (Motif 4)

T A G C G T A C A G C T A C T G A T G C G C A T A C T G T C A G A T C G C T A G
Reverse Opposite:
G A T C A T G C A G T C A G T C C G T A A T C G T G A C T C G A A C T G A T C G
p-value:1e-16
log p-value:-3.707e+01
Information Content per bp:1.637
Number of Target Sequences with motif179.0
Percentage of Target Sequences with motif21.99%
Number of Background Sequences with motif5594.7
Percentage of Background Sequences with motif11.70%
Average Position of motif in Targets48.2 +/- 24.6bp
Average Position of motif in Background49.5 +/- 28.7bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:1
Score:0.86
Offset:-5
Orientation:forward strand
Alignment:-----CCBGCTGGGR
GGCCYCCTGCTGDGH
 A C G T A C G T A C G T A C G T A C G T T A G C G T A C A G C T A C T G A T G C G C A T A C T G T C A G A T C G C T A G
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:2
Score:0.86
Offset:0
Orientation:forward strand
Alignment:CCBGCTGGGR
CCTGCTGAGH
 T A G C G T A C A G C T A C T G A T G C G C A T A C T G T C A G A T C G C T A G
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.85
Offset:-3
Orientation:reverse strand
Alignment:---CCBGCTGGGR--
TCNCCTGCTGNGNNN
 A C G T A C G T A C G T T A G C G T A C A G C T A C T G A T G C G C A T A C T G T C A G A T C G C T A G A C G T A C G T
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.84
Offset:-3
Orientation:reverse strand
Alignment:---CCBGCTGGGR
CCCCCTGCTGTG-
 A C G T A C G T A C G T T A G C G T A C A G C T A C T G A T G C G C A T A C T G T C A G A T C G C T A G
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.84
Offset:-3
Orientation:reverse strand
Alignment:---CCBGCTGGGR--
TNTCCTGCTGTGNNG
 A C G T A C G T A C G T T A G C G T A C A G C T A C T G A T G C G C A T A C T G T C A G A T C G C T A G A C G T A C G T
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.82
Offset:-3
Orientation:reverse strand
Alignment:---CCBGCTGGGR--
NNTCCTGCTGTGNNN
 A C G T A C G T A C G T T A G C G T A C A G C T A C T G A T G C G C A T A C T G T C A G A T C G C T A G A C G T A C G T
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

ZIC1/MA0696.1/Jaspar

Match Rank:7
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----CCBGCTGGGR
GACCCCCCGCTGTG-
 A C G T A C G T A C G T A C G T A C G T T A G C G T A C A G C T A C T G A T G C G C A T A C T G T C A G A T C G C T A G
A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:8
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----CCBGCTGGGR
GACCCCCCGCTGCGC
 A C G T A C G T A C G T A C G T A C G T T A G C G T A C A G C T A C T G A T G C G C A T A C T G T C A G A T C G C T A G
A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C

ZIC4/MA0751.1/Jaspar

Match Rank:9
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----CCBGCTGGGR
GACCCCCCGCTGTGC
 A C G T A C G T A C G T A C G T A C G T T A G C G T A C A G C T A C T G A T G C G C A T A C T G T C A G A T C G C T A G
A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.67
Offset:3
Orientation:forward strand
Alignment:CCBGCTGGGR
---GCTGTG-
 T A G C G T A C A G C T A C T G A T G C G C A T A C T G T C A G A T C G C T A G
A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T