Information for 3-BGGCCAATCASMW (Motif 2)

A G C T C T A G T A C G A G T C A G T C C T G A C G T A A C G T T A G C T C G A T A C G G T C A C G T A
Reverse Opposite:
G C A T C A G T A T G C A G C T A T C G C G T A A C G T A G C T A C T G A C T G A G T C A G T C T C G A
p-value:1e-17
log p-value:-4.139e+01
Information Content per bp:1.692
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif4.67%
Number of Background Sequences with motif352.9
Percentage of Background Sequences with motif0.74%
Average Position of motif in Targets51.6 +/- 25.6bp
Average Position of motif in Background48.7 +/- 27.8bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.91
Offset:1
Orientation:forward strand
Alignment:BGGCCAATCASMW
-AGCCAATCGG--
 A G C T C T A G T A C G A G T C A G T C C T G A C G T A A C G T T A G C T C G A T A C G G T C A C G T A
A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T A C G T

NFYB/MA0502.1/Jaspar

Match Rank:2
Score:0.87
Offset:-4
Orientation:forward strand
Alignment:----BGGCCAATCASMW
AAATGGACCAATCAG--
 A C G T A C G T A C G T A C G T A G C T C T A G T A C G A G T C A G T C C T G A C G T A A C G T T A G C T C G A T A C G G T C A C G T A
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:3
Score:0.87
Offset:-2
Orientation:forward strand
Alignment:--BGGCCAATCASMW
ACTAGCCAATCA---
 A C G T A C G T A G C T C T A G T A C G A G T C A G T C C T G A C G T A A C G T T A G C T C G A T A C G G T C A C G T A
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T A C G T

NFYA/MA0060.2/Jaspar

Match Rank:4
Score:0.84
Offset:-1
Orientation:reverse strand
Alignment:-BGGCCAATCASMW----
TGGACCAATCAGCACTCT
 A C G T A G C T C T A G T A C G A G T C A G T C C T G A C G T A A C G T T A G C T C G A T A C G G T C A C G T A A C G T A C G T A C G T A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:BGGCCAATCASMW
-TGCCAA------
 A G C T C T A G T A C G A G T C A G T C C T G A C G T A A C G T T A G C T C G A T A C G G T C A C G T A
A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T

Dux/MA0611.1/Jaspar

Match Rank:6
Score:0.70
Offset:3
Orientation:forward strand
Alignment:BGGCCAATCASMW
---CCAATCAA--
 A G C T C T A G T A C G A G T C A G T C C T G A C G T A A C G T T A G C T C G A T A C G G T C A C G T A
A C G T A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-BGGCCAATCASMW
CGTGCCAAG-----
 A C G T A G C T C T A G T A C G A G T C A G T C C T G A C G T A A C G T T A G C T C G A T A C G G T C A C G T A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T

EN2/MA0642.1/Jaspar

Match Rank:8
Score:0.65
Offset:2
Orientation:forward strand
Alignment:BGGCCAATCASMW
--CCCAATTAGC-
 A G C T C T A G T A C G A G T C A G T C C T G A C G T A A C G T T A G C T C G A T A C G G T C A C G T A
A C G T A C G T T A G C A T G C A G T C T G C A T G C A A C G T A G C T C T G A T A C G A T G C A C G T

PH0026.1_Duxbl/Jaspar

Match Rank:9
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-BGGCCAATCASMW---
CGACCCAATCAACGGTG
 A C G T A G C T C T A G T A C G A G T C A G T C C T G A C G T A A C G T T A G C T C G A T A C G G T C A C G T A A C G T A C G T A C G T
A G T C C T A G C T G A A G T C A G T C A G T C G T C A G T C A A G C T A G T C C G T A C T G A A G T C T A C G T C A G G C A T T A C G

MSX2/MA0708.1/Jaspar

Match Rank:10
Score:0.64
Offset:3
Orientation:forward strand
Alignment:BGGCCAATCASMW
---CCAATTAA--
 A G C T C T A G T A C G A G T C A G T C C T G A C G T A A C G T T A G C T C G A T A C G G T C A C G T A
A C G T A C G T A C G T T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A A C G T A C G T