Information for 2-CTATTGTCATTCA (Motif 2)

A G T C A G C T C G T A A C G T A C G T C T A G A C G T A G T C G T C A A C G T A C G T A G T C C G T A
Reverse Opposite:
C G A T C T A G C G T A C G T A A C G T C T A G G T C A A G T C C G T A C G T A G C A T C T G A C T A G
p-value:1e-21
log p-value:-4.967e+01
Information Content per bp:1.839
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.27%
Number of Background Sequences with motif3.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets54.0 +/- 26.7bp
Average Position of motif in Background39.1 +/- 18.7bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:1
Score:0.67
Offset:2
Orientation:forward strand
Alignment:CTATTGTCATTCA-
--SCTGTCAVTCAV
 A G T C A G C T C G T A A C G T A C G T C T A G A C G T A G T C G T C A A C G T A C G T A G T C C G T A A C G T
A C G T A C G T T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CTATTGTCATTCA-
--NCTGTCAATCAN
 A G T C A G C T C G T A A C G T A C G T C T A G A C G T A G T C G T C A A C G T A C G T A G T C C G T A A C G T
A C G T A C G T T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CTATTGTCATTCA
CCWTTGTY-----
 A G T C A G C T C G T A A C G T A C G T C T A G A C G T A G T C G T C A A C G T A C G T A G T C C G T A
A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T A C G T A C G T A C G T

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CTATTGTCATTCA---
-CTTTGTTATGCAAAT
 A G T C A G C T C G T A A C G T A C G T C T A G A C G T A G T C G T C A A C G T A C G T A G T C C G T A A C G T A C G T A C G T
A C G T A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T

PB0178.1_Sox8_2/Jaspar

Match Rank:5
Score:0.60
Offset:6
Orientation:forward strand
Alignment:CTATTGTCATTCA-------
------ACATTCATGACACG
 A G T C A G C T C G T A A C G T A C G T C T A G A C G T A G T C G T C A A C G T A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CTATTGTCATTCA
CCATTGTTNY---
 A G T C A G C T C G T A A C G T A C G T C T A G A C G T A G T C G T C A A C G T A C G T A G T C C G T A
A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T A C G T A C G T A C G T

PB0170.1_Sox17_2/Jaspar

Match Rank:7
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CTATTGTCATTCA------
--GACCACATTCATACAAT
 A G T C A G C T C G T A A C G T A C G T C T A G A C G T A G T C G T C A A C G T A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

PB0073.1_Sox7_1/Jaspar

Match Rank:8
Score:0.59
Offset:-7
Orientation:reverse strand
Alignment:-------CTATTGTCATTCA--
TNNANNTCTATTGTTNTNNANN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G C T C G T A A C G T A C G T C T A G A C G T A G T C G T C A A C G T A C G T A G T C C G T A A C G T A C G T
C G A T T C A G C G T A C G T A C T G A C G A T C G A T A G T C G A C T C G T A A G C T C G A T T C A G C G A T G A C T G A T C G C A T C G A T G A C T T G C A C G A T C A G T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:9
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CTATTGTCATTCA
---YTGWCADY--
 A G T C A G C T C G T A A C G T A C G T C T A G A C G T A G T C G T C A A C G T A C G T A G T C C G T A
A C G T A C G T A C G T G A C T G C A T C T A G C G A T G A T C T C G A C A T G G A T C A C G T A C G T

PB0119.1_Foxa2_2/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CTATTGTCATTCA-
NCNTTTGTTATTTNN
 A C G T A G T C A G C T C G T A A C G T A C G T C T A G A C G T A G T C G T C A A C G T A C G T A G T C C G T A A C G T
A T G C A T G C A T C G A G C T C A G T C A G T C T A G G C A T G A C T T C G A C A G T G A C T G C A T A G C T A G C T